Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01549 ATGGCTCTGGTAACGCCATTGATAAATAACCCGAGCGACGGAGGAGAACGCGAGAAGCCTGCATGTTTGGCGATCAAAGAGTTCGGATACGAGTCTAAGAGGCTATGGAAGATCTCCGGCCCGACTATCTTCATGTCCTTGAGCCAGTATTCACTCGGTGTGGTCACTCAGGCTTTTGCCGGTCAGGTGGGCGATCTCGAGCTTGCAGCTGTGTCCGTCGAGAACACCGTTATCGCCGGCTTGGCCTTCGGAATCATGTTAGGGATGGGGAGTGCGCTGGAGACATTATGCGGGCAGGCATATGGTGCCGGCAATATCAGGATGATGGGCGTGTACATGCAGAGATCATGGATAATTTTGTTGACCACGGCCTGTGTACTGGTTCCAGTCTATGTCTTTTCCCCTCCCATTCTCCATCTCATCGGAGAGACGACTGAGATTTCGAAAGCTGCAGGAAAATTCGCTGTTTGGATGCTTCCGCAATTATTCGCATACGCAATGAACTTTCCGATACAGAAGTTTCTTCAATCGCAGCGGAAAGTGATAGCGATGGCCTGGATTGCCGGCGTAGTGCTGGCGTTACACGTTTTCTTCAGCTGGTTGCTGATATTGAAACTTGGGTGGGGGTTAAAAGGAGCCGCCGTTACTCTCAACTCATCGTGGTGGCTCGTAGTGATCGCAAAGTTACTCTACATTTTCATCACAAAGTCGGACGGCGCTTGGAGTGGCTTCTCGTGGCTGGCGTTTTCCAATTTGTATGGGTTTTTCAAGCTTTCTCTCGCGTCTGGTGTAATGCTTTGCTTGCAATTTTGGAACTTGATGATATTAGTGGTGATAACTGGACGTTTGTCCAATCCTCTAGTCCCAGTCGATGCCATCTCAATTTGTTTGACCATCCAAGAGTGGATTGCAATGATATTTTATGGCTTCAACGCTGCTGTAAGTGTGAGAGTTTCAAACGAACTCGGGGCCAGGAATGCCCAAGCCGCAAAGTTTGCCGTCTTCGTCGTCTCCTCAACAGGAGTGGCAATTGGAGTGGTTTGTATGATCGTAGTTTTATGTACCAGACACTACTTCCCTTACGTTTTCACTACCAGTGAAGCTGTTGCTAAAGAAACAACCAAGCTAGCCCCTTTGCTTGGATTTACAGTGTTTCTCTACAGCATCCAACCCATTTTATCTGGTAATTTATACCCTTTCCTGTATAAACCACCAATTCATGATGAACCAGAAGCTTTAACTGAAATAGTGATTCTTCTTTTCTTCAAGGGGTTGCTGTCGGAGCGGGATGGCAAGCAATGGTTGCATATATCAACATTGGATGTTTCTACATCATCGGATTACCGGCCGGCATTCTGCTGGGATTCAAGTTTAAATTGGGAGTTGAGAGTAATCAATGGCTATAGCTCTGGTGACGCCATTGGTAAACCACCAGAGCGGCCTCAACGGCATAGGAGAAGCCCAGAACTAGAAGGCTACATGTTTGGTGATCAAAGAAATTGGATACGAGTAGGAGTAGAAGTCGAAGGGGATCTAGAAGACCATAGGCCCAAATCTCTGATTGAATCTCTGCCGAGATCCGATGTGAACACTCAAGTTCTTGGTATCTCGACCAAGAGTTCGTCTACCTCTGCTATCCTACCTTCAGTTCGCAGAGACGAAAGGCAAATGGCGACCTCCGTCTCCTCTCTCGCCTACACTCTCTCTTCTCTTTCGTTTTCCTCCCAGGTTTCTCGTAAACCTGTCAATCTCTCTTTTCCTCGACTGAATGCGGTCTCTCTTTCTCACGCGTTCACTTCTCCTGCGTTTGTTGTTTCCGCCTCTGCCGCTTCTTCTGCCATCGGATTGGAAACAGAAGACCTAGAGAAATACGTGAAATCTCGTCTTCCTGGTGGTTTTGCTGCTCAAACAATTATTGGCACTGGTCGAAGAAAATCGGCTATTGCTCGCGTTGTCCTCCAAGAAGGCACTGGCAAAGTTATCATCAATTACCGTGACGCCAAGGAATATCTTCAAGGCAATCCCTTGTGGCTTCAATACGTCAAAGTACCTTTAGTAACTTTGGGATATGAGAGTGGCTATGATGTGTTCGTCAAAGCTCATGGTGGCGGCCTCTCAGGTCAGGCTCAGGCAATATCCCTCGGAGTTGCTCGGGCCTTGTTGAAAGTTAGTGCAGATCATAGGCCACCTCTGAAAAAAGATAAGCTTTTAACCAGAGATTCAAGAGTAGTTGAAAGGAAGAAAGCTGGACTCAAGAAAGCTCGTAAAGCTCCTCAATATTCCAAACGTTGA 2292 47.34 MALVTPLINNPSDGGEREKPACLAIKEFGYESKRLWKISGPTIFMSLSQYSLGVVTQAFAGQVGDLELAAVSVENTVIAGLAFGIMLGMGSALETLCGQAYGAGNIRMMGVYMQRSWIILLTTACVLVPVYVFSPPILHLIGETTEISKAAGKFAVWMLPQLFAYAMNFPIQKFLQSQRKVIAMAWIAGVVLALHVFFSWLLILKLGWGLKGAAVTLNSSWWLVVIAKLLYIFITKSDGAWSGFSWLAFSNLYGFFKLSLASGVMLCLQFWNLMILVVITGRLSNPLVPVDAISICLTIQEWIAMIFYGFNAAVSVRVSNELGARNAQAAKFAVFVVSSTGVAIGVVCMIVVLCTRHYFPYVFTTSEAVAKETTKLAPLLGFTVFLYSIQPILSGNLYPFLYKPPIHDEPEALTEIVILLFFKGLLSERDGKQWLHISTLDVSTSSDYRPAFCWDSSLNWELRVINGYSSGDAIGKPPERPQRHRRSPELEGYMFGDQRNWIRVGVEVEGDLEDHRPKSLIESLPRSDVNTQVLGISTKSSSTSAILPSVRRDERQMATSVSSLAYTLSSLSFSSQVSRKPVNLSFPRLNAVSLSHAFTSPAFVVSASAASSAIGLETEDLEKYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESGYDVFVKAHGGGLSGQAQAISLGVARALLKVSADHRPPLKKDKLLTRDSRVVERKKAGLKKARKAPQYSKR 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55165282 55172873 - BLOR01549 Blo01g01549 55989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01549 763 MobiDBLite consensus disorder prediction 731 747 - -
Blo01g01549 763 SUPERFAMILY Ribosomal protein S5 domain 2-like 637 763 IPR020568 -
Blo01g01549 763 ProSitePatterns Ribosomal protein S9 signature. 702 720 IPR020574 GO:0003735|GO:0005840|GO:0006412
Blo01g01549 763 CDD MATE_eukaryotic 31 395 IPR045069 GO:0042910|GO:1990961
Blo01g01549 763 Pfam Ribosomal protein S9/S16 642 763 IPR000754 GO:0003735|GO:0005840|GO:0006412
Blo01g01549 763 MobiDBLite consensus disorder prediction 748 763 - -
Blo01g01549 763 Gene3D - 629 763 IPR014721 -
Blo01g01549 763 MobiDBLite consensus disorder prediction 731 763 - -
Blo01g01549 763 PANTHER PROTEIN DETOXIFICATION 33 21 395 - -
Blo01g01549 763 Hamap 30S ribosomal protein S9 [rpsI]. 633 763 IPR023035 -
Blo01g01549 763 Pfam MatE 41 201 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo01g01549 763 Pfam MatE 263 396 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo01g01549 763 TIGRFAM matE: MATE efflux family protein 41 396 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo01g01549 763 PANTHER MULTIDRUG RESISTANCE PROTEIN 21 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01549 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - jre:109009822 602.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01549 Blo-Chr1:55165282 Blo11g00928 Blo-Chr11:19558678 2.24E-140 dispersed
Blo01g01549 Blo-Chr1:55165282 Blo01g01550 Blo-Chr1:55182151 0 tandem
Blo15g00175 Blo-Chr15:1781772 Blo01g01549 Blo-Chr1:55165282 5.08E-09 transposed
Blo01g01549 Blo-Chr1:55165282 Blo12g00916 Blo-Chr12:27339185 1.56E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g872 Blo01g01549 . Bda01g00550 . Bpe02g00408 . . Bma01g02299 . . Cma01g01885 . Car01g01469 . . . . . . . . . . . . . . . . . . . Cone7ag1794 . . Lsi04g01634 Csa03g04178 Chy04g00540 . . . . . . . . . . Cmo01g01948 . . . . . . Cpe02g00146 . . . . . . . Cla05g01967 Cam05g2118 Cec05g2129 Cco05g2181 Clacu05g2106 Cmu05g1982 Cre05g2101 . . . Cme04g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009850 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01549 Blo_Chr01 FPKM 0.612999 0.590952 0.57304 0.274191 3.027607 1.67752 2.765832 0.455186 0.485968 0.033288