Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01550 ATGGCTCTGGAAACGCCATTGGTGAACAACCAGAGCGATCTCGGCAGTGGAGGAGAAGGTGAGAAGGCGGCGTGTTTGGTTGTCAAACAGTTTAGGTACGAGTCGAAAAGGTTATGGAAGATTGCGGCACCGGCTATCTTCACGGCCATCTGCCGGTACTCGCTCGGTGCGCTCACTCAGACTTTCACCGGTCAGGTGGGAGAGCTTGAGCTAGCGGCTGTTTCCGTTGAGAACTCCGTAGTCGCCGGTTTCGCCTTCGGCATCATGTTGGGCATGGGAAGTGCGTTGGAGACGTTATGTGGGCAGGCCTACGGCGCAGGGAAGATTAGGATGCTAGGAGTGTACATGCAGAGATCATGGATTATTCTGCTGACAACAGCCTGCGTTTTGGTTCCAATCTACGTATTCTCTCCTCCTATTCTCCATCTCATCGGAGAGACCACTCCGATTTCCAAGGCTGCCGGAAAATTTGCTCTATGGATGCTTCCACAATTATTTGCATACGCAATTAATTTTCCGATACAGAAGTTTCTTCTATCCCAGAGAAAAGTGATGGTGATGGCCTGGGTTTCAGTGGTGGTGCTAGCATTACACGCCTTCTTCAGCTGGTTGCTGATATTGAAACTTGGCTGGGGCTTGACCGGAGCCGCCATAACGCTCAACACTTCGTGGTGGCTCATCGTGATCGGACAGTTGCTTTACATTTTCATCACCAAGTCAGACGGTGCGTGGAGTGGCTTCTCGTGGCTGGCCTTTTCAGACTTGTATCCCTTCGTCAAGCTTTCTCTTGCGTCTGCCATAATGCTTTGCTTGGAGTTCTGGTACTTTATGGTGCTGGTGGTTATAACAGGGCGTTTGGCCAATCCTCTAGTTCCCGTCGACGCCATCTCCATTTGTATGAACATCCAAGGATGGACTATCATGATTTTCTTTGGCTTCAACGCTGCTATAAGTGTGAGAGTCTCTAATGAACTAGGAGCCGGGAATGCCCAGACTGCAAAATTCGCCGTGCTCGTAGTCTCCCTGACGTCGGTGGCGATCGGCGTGGTTTGTATGACCGTCGTGCTAAGTACAAGAGACTATTTCCCACATCTTTTTACGAGTAGTGAAGCTGTGGCTAAAGAAACCACAAAGCTAGCCACTTTACTCGGATTCACGGTGCTTCTCGGCAGCCTGCAGCCAGTTTTATCCGGGGTCGCCGTCGGAGCAGGGTGGCAATCGATCATTGCGTATATTAACATCGGATGCTATTATGTTGTCGGATTACCTGCCGGAATACTCATGGGATTCAAGTTTGATCTCGGGGTTGAGGTAATGTGTGATGTGCTAATAGAGCATAGCTATTAG 1347 50.04 MALETPLVNNQSDLGSGGEGEKAACLVVKQFRYESKRLWKIAAPAIFTAICRYSLGALTQTFTGQVGELELAAVSVENSVVAGFAFGIMLGMGSALETLCGQAYGAGKIRMLGVYMQRSWIILLTTACVLVPIYVFSPPILHLIGETTPISKAAGKFALWMLPQLFAYAINFPIQKFLLSQRKVMVMAWVSVVVLALHAFFSWLLILKLGWGLTGAAITLNTSWWLIVIGQLLYIFITKSDGAWSGFSWLAFSDLYPFVKLSLASAIMLCLEFWYFMVLVVITGRLANPLVPVDAISICMNIQGWTIMIFFGFNAAISVRVSNELGAGNAQTAKFAVLVVSLTSVAIGVVCMTVVLSTRDYFPHLFTSSEAVAKETTKLATLLGFTVLLGSLQPVLSGVAVGAGWQSIIAYINIGCYYVVGLPAGILMGFKFDLGVEVMCDVLIEHSY 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55182151 55184132 - BLOR01550 Blo01g01550 55990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01550 448 TIGRFAM matE: MATE efflux family protein 44 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo01g01550 448 CDD MATE_eukaryotic 34 436 IPR045069 GO:0042910|GO:1990961
Blo01g01550 448 Pfam MatE 44 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo01g01550 448 Pfam MatE 265 425 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo01g01550 448 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 441 - -
Blo01g01550 448 PANTHER PROTEIN DETOXIFICATION 33 22 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01550 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - jre:109009822 700.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01550 Blo-Chr1:55182151 Blo11g00928 Blo-Chr11:19558678 6.52E-177 dispersed
Blo01g01549 Blo-Chr1:55165282 Blo01g01550 Blo-Chr1:55182151 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g873 Blo01g01550 . Bda01g00549 . Bpe02g00407 . . Bma01g02300 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1795 Cone17ag1315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001944 2 1 2 3 1 1 1 1 1 2 1 1 3 1 1 3 1 5 1 1 1 3 2 6 4 1 2 4 7 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01550 Blo_Chr01 FPKM 3.631613 3.63415 3.857092 3.696234 11.457791 14.455505 12.405236 4.348673 5.651075 4.893905