Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01553 ATGGAGAAACATCCGCGAAGTGAGAGTATTCTTTTGGGTTTTAGTCCTCAAATGTCTTTCGGAAATCCAGCTTCTTCTTCGCCTACCGTCTCTGATGGGAACTCCGATATTGACTTTAACGATGTGTTCGGTGGGCCGCCGAGAAGACGCTCGTCTATTAGCGAGAGTCGCTACAGCTTGAACGAGAATGCAGATTCGTTCCCGTCAAAACCAGATGCCGAACTAGTCGCGAGTCGTAATCTGTGGTCGGGTTTGAGTGAAAAGCCTGTGTTTGGGGAAGAACCAGCTTACGCAAGACGACATCCAGGTGATGGTTTCTTTGACGACATATTCAAAAGCGAGGAGTCTGGTGCTTCTACTCCTATACGACACGATAGGGAACCTTTTTCGCCCATGTCGAGTTCTCTGGTTTTGAGCCCTGTTAGACCTTTGCCTCCCATGGCTGAGACCTTCGAGAGTCCTTCTCTGACTGCAAAATTCAGCCTACCCGCAAGAGTGGCCGGAGGGATTGACGTTTCTTTGCTGGGTTCTGCTACTCACAGCTCAAGCAAACACAAGGGTGCAGCTTTTAGTGGAGCCAATCACTCATTTTCTCCTTCACTTCCTAGATTTTCCAGCCTATCAAGTCAAGCTCAGGAGGATGCAAAACATGATATTCAGTCTTTTTATCGGCCCAGCCTCTCCTCTCACGAGTTGAGTCAGAACAGGGAAGAACCATCCAGGCAAGAAAATACAGATGGAACAAACATTGGAAGTAATTTGGAGATGGCATTCAAAAGTACTGAAGATTCAATCAACGAAAGCCAACTTCCATTTCATTTTTCAATATATAAGTGGGCAAACAAGGAGGTGTCTTTTACAATGCCACCGACAAGAGGGCATGTATCGAGATTAAAACAAACCGCTAAAACCAGGAGATGCTCGAGTTCTAATGGCAGGATGGTGACTGAAAAGAATGCTAAGCAGTCTCCTACATCAACCACTCTGGGTAATTCTGATCGTCCCTCCGGCGATCATCCATTAACGAGCACTGATTATTTCAAATTAAGACCTGAGAACGAAGGAAGTGATTCCATTTTAGAAGAGACCAATCAACAGAGCAAAAAAAGGCCACAAATTATTGAGGAACCAATTCTCCCCAAACCCCAACAGGAGAAGACGAGTAGTCTTCACAAGACTGCAGATCGTGCTCTCTTACACCACTCAAGAAGAGAAGCTAAATATGCAGGTGGTTATGGTTTGGAAGAGAGCAATCAAAATAAACAAAAACCGTTTCAAATCGCCGAAGAACCAATTCTCTCCAAATCAGAATCAGAGAAGGCAAGCAGTGTTCAGGAGACTGTAGTTTATATCAGACTTTCCGAGAGAACAGAGAAGCAGCTGCCGGAGTGTACAAAAGAGGCCATCAAGCATGAATCCCAATCTGCTCATCCGATTGTAGATGATAATAAGGCTAAAGGAGGTTTTATTTGCCATATTTTAAACCACCTTTTGTCATATATAGCAGCAAAAGAGTCATTGATATTGGATGATGGTAATGAAATCAAAGCGAAAAGCAATAGAAGATCACCTCTAAGTTTCAACAGTAACAAAATTTCAAAGAAAGAGGACGGAGAAGCAACAATGGTAAGAAAGACGGAGGTCGAAAAATCTAGTTCTCAAAGTTCATCATCAAGTTCTGGACTCAGCGCCGATCGACAGAGAGTTGGAAAGGTGAAAGAGTTTGTCAAGATTTTCAACCAAGAGCTTCCATCGACGTCCAAAGCTGGTATGGACAACCACAGCCCGAGCTCTAAACAGAAACATAGAGGAAATTCTGGAACAGCCATCGAAGTTGGTGCTACCACTAAAACTGACCAGAAAGTTCCACTGCAAAATTTAAACAATACAGTTGCAAATGTTTCAGTCAAGGTGGACGAGCCTTCAAAGGAACAACCTGCCGCAAAAACTTCATATTCGGAGCAGAATAGCCCCGCTGACTCAAAGATTACAGTTGTAGATATTGATGAGGAGACCTTCCAAGAGAATTTTCTGATAAAAGAATTACCCAAGGATGAAATCAAACAACCACGGATGCAGAATGATGGGGAAGAAATCAAAGCTATTGACGCTAAAATACGACAATGGTCCAGAGGAAAGGAAGGGAATATACGCTCACTTTTGTCGACTCTGCAATATGTTCTTTGGCCCGAGAGCGGGTGGAAACCTGTACCGCTTGTCGACATTATCGATGGGAATGCAGTGAAAAGATCGTATCAAAGAGCTTTGCTCTGTCTACACCCAGATAAGCTTCAGCAGAGGGGCGTTACTTCCCAACAAAAATACACAGCCGAAAAAGTTTTTGATATTTTGCAGCGCAAGGATTTGAAACCAGTTAGGGTTGCTCCTAACGGCGATGAAGTCTCTGAGATGTCAATCAAACTTTCGGTTCCCCTAAAACGATGTGATTGGATCACGCCAAATTCCGATCCAATTTACGTCTCTTTCCATGATGAAGAATGGGGTCTTCCTGTTCATGATGAGAATAGACTGTTCGAACTGCTTGTATTTTCGATCGCATTAGCAGAACTCAGCTGGCCTGAGATTCTTCATAGGAGAGATACATTCAGGATGGCTTTTGATAATTTTGACCCATCATCAATAGCAATGTTCACGGAGAAGAAGCTACTATCACTTAAAACAAATGGCTTTCTGTTGCTATCTGAGCCAAAACTTCGTGCCATTGTAGAGAATGCCAAACATGTTCTAAAGGTTCAACTGGAGTTTGGTTCCTTCAGTAATTATTGTTGGACGTTTGTTAATAAGAAGCCTATTAGAAATGGATTCCGCTATGCACGGCAAGTACCTGTAAAGACGCCAAAATCAGACCTGATGAGCAAAGACTTGATGCAGAGAGGATTCCGTTGTGTCGGACCAACCGCTGTTTATTCATTCATGCAAGCGGCCGGAATGGTTAACGATCATCTCGTGTCGTGTTTTAGATACCACGAGTGTAATCCGCAATCCAACAAAGATTTGGAGCCAAAATTTGAGGAAAAGAATTTACTGAAGTTTTGGAGAAAACATGCTTTTCATCAATTGACGACCAAGGCAAGCCCCGTCCCTGAGATCGAAACAACGATTGGTTAG 3129 43.34 MEKHPRSESILLGFSPQMSFGNPASSSPTVSDGNSDIDFNDVFGGPPRRRSSISESRYSLNENADSFPSKPDAELVASRNLWSGLSEKPVFGEEPAYARRHPGDGFFDDIFKSEESGASTPIRHDREPFSPMSSSLVLSPVRPLPPMAETFESPSLTAKFSLPARVAGGIDVSLLGSATHSSSKHKGAAFSGANHSFSPSLPRFSSLSSQAQEDAKHDIQSFYRPSLSSHELSQNREEPSRQENTDGTNIGSNLEMAFKSTEDSINESQLPFHFSIYKWANKEVSFTMPPTRGHVSRLKQTAKTRRCSSSNGRMVTEKNAKQSPTSTTLGNSDRPSGDHPLTSTDYFKLRPENEGSDSILEETNQQSKKRPQIIEEPILPKPQQEKTSSLHKTADRALLHHSRREAKYAGGYGLEESNQNKQKPFQIAEEPILSKSESEKASSVQETVVYIRLSERTEKQLPECTKEAIKHESQSAHPIVDDNKAKGGFICHILNHLLSYIAAKESLILDDGNEIKAKSNRRSPLSFNSNKISKKEDGEATMVRKTEVEKSSSQSSSSSSGLSADRQRVGKVKEFVKIFNQELPSTSKAGMDNHSPSSKQKHRGNSGTAIEVGATTKTDQKVPLQNLNNTVANVSVKVDEPSKEQPAAKTSYSEQNSPADSKITVVDIDEETFQENFLIKELPKDEIKQPRMQNDGEEIKAIDAKIRQWSRGKEGNIRSLLSTLQYVLWPESGWKPVPLVDIIDGNAVKRSYQRALLCLHPDKLQQRGVTSQQKYTAEKVFDILQRKDLKPVRVAPNGDEVSEMSIKLSVPLKRCDWITPNSDPIYVSFHDEEWGLPVHDENRLFELLVFSIALAELSWPEILHRRDTFRMAFDNFDPSSIAMFTEKKLLSLKTNGFLLLSEPKLRAIVENAKHVLKVQLEFGSFSNYCWTFVNKKPIRNGFRYARQVPVKTPKSDLMSKDLMQRGFRCVGPTAVYSFMQAAGMVNDHLVSCFRYHECNPQSNKDLEPKFEEKNLLKFWRKHAFHQLTTKASPVPEIETTIG 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55291080 55296929 - BLOR01553 Blo01g01553 55993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01553 1042 MobiDBLite consensus disorder prediction 225 251 - -
Blo01g01553 1042 Gene3D DnaJ domain 693 788 IPR036869 -
Blo01g01553 1042 SUPERFAMILY Chaperone J-domain 700 785 IPR036869 -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 12 36 - -
Blo01g01553 1042 Pfam Methyladenine glycosylase 821 994 IPR005019 GO:0006284|GO:0008725
Blo01g01553 1042 MobiDBLite consensus disorder prediction 519 566 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 52 66 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 646 660 - -
Blo01g01553 1042 SUPERFAMILY DNA-glycosylase 813 998 IPR011257 GO:0003824|GO:0006281
Blo01g01553 1042 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 786 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 547 565 - -
Blo01g01553 1042 Gene3D Hypothetical protein; domain 2 812 996 - -
Blo01g01553 1042 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 786 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 583 607 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 532 546 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 637 660 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 289 392 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 1 71 - -
Blo01g01553 1042 MobiDBLite consensus disorder prediction 302 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01553 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] - qsu:112012159 464.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01553 Blo-Chr1:55291080 Blo16g00053 Blo-Chr16:1913155 6.49E-34 dispersed
Blo01g00630 Blo-Chr1:7093356 Blo01g01553 Blo-Chr1:55291080 3.72E-87 transposed
Blo04g00452 Blo-Chr4:3723927 Blo01g01553 Blo-Chr1:55291080 5.30E-39 transposed
Blo05g00160 Blo-Chr5:1469998 Blo01g01553 Blo-Chr1:55291080 1.90E-80 transposed
Blo16g01074 Blo-Chr16:39297959 Blo01g01553 Blo-Chr1:55291080 1.88E-62 transposed
Blo01g01553 Blo-Chr1:55291080 Blo12g00911 Blo-Chr12:27295851 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g224 Blo01g01553 . . . . Bpe04g00208 . . Cmo04g02503 Cmo15g00664 . . . . Sed01g3080 . . Bhi04g01874 Tan11g1245 Cmetu03g1597 . Hepe02g2217 . Lcy10g1250 Cla08g00620 Cam08g1034 Cec08g0623 Cco08g0735 Clacu08g0744 . Cre08g0552 . . Cone17ag0822 . . . . Cme03g00497 . . . Bda13g01471 . Bpe14g00394 . Bma02g00207 . . . . . Car04g02309 Car15g00604 Cpe01g02071 . . . . . . . . . . . . . . . Lsi08g00460 . Chy03g00758 .
Vvi18g899 Blo01g01553 . Bda01g00542 . Bpe02g00401 . . Bma01g02307 . . Cma01g01890 . Car01g01474 . . Cpe06g00122 . . . . . . . . . . . . . . . Cone4ag1893 Cone7ag1805 . . Lsi04g01641 Csa03g04184 Chy04g00533 . . . . . . . . . . Cmo01g01953 Cmo09g00169 . . . Car09g00154 . Cpe02g00142 . . . . . . . . . . . . . . . . . Cme04g00613
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008489 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01553 Blo_Chr01 FPKM 19.794361 23.098097 17.174902 18.062197 9.501216 10.392539 9.834409 20.995966 21.370241 20.700533