Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01561 ATGGCGGGTGATGTGCAATGCTGCGAAACGGAATTCTTTCTGTATATAGTTGTGATTATTGGGTTGGTGGCTTTCGCCGGATTAATGGCCGGACTTACTTTGGGTCTGATGTCTTTGGGTCTCGTCGACCTTGAGGTTCTGATCAAGTCCGGCCAACTTCAAGATCGGCTCTACGCTGCAAAAATATTCCCTGTGGTGAAGAACCAGCATCTTCTTCTTTGCACACTTTTGATTGGCAACTCTTTAGCAATGGAGACTCTTCCGATATTCTTGGATAAGATCGTCCCTCCATGGGCAGCAATTCTCTTATCAGTCACATTAATCCTCATGTTTGGAGAGATATTGCCCCAAGCCATTTGTACTCGCTACGGATTGAAAGTCGGAGCGCTGATGGCTCCGTTTGTTCGTGTTCTTCTCATACTCTTCTTCCCCATTTCCTATCCCATCAGTAAGGTTTTAGACTATATGCTGGGAAAGGGCCACGCTGTTCTTTTAAGACGAGCAGAGCTCAAGACTTTCGTGCATTTTCATGGCAACGAGGCTGGAAAAGGTGGAGATTTAACACACGATGAGACGACCATCATAGCCGGAGCCCTTGAATTGACTGAAAAAACAGCAAAAGATGCCATGACTCCCATATCAAATACATATTCCCTCGATCTCGACACGATGCTTGACTTGAAAACACTCAATACAATTATGTCTAAGGGTCATAGTAGAGTTCCTGTTTATTTGGGAAGGCCTACGGACATTATCGGACTTGTTCTGGTTAAAAATCTACTTTCAGTTGACCCTGCAGATGCAGTTATCCTGAGAAAAATGATTATAAGAAAGATTCCTCGAGTGTCTGAAGACATGCCTCTCTATGACATTCTAAACGAATTCCAGAAAGGGCACAGTCATATTGCAGTTGTGTTTAAGGATCTGAACGAGAAAAACGAAACGACCAAGAAGAGCAAAGCACATCAAGAGCATAATTCGAAGGACAGTTGTGAAAAGCAGAGAAGCCAATCCGAGAGTCTGTTTAAAAAAGATGGTGTTGGCCCGGAGGCAGCACAGAATGATGCTAAATCGGCTTCGACGGTGAACAATGGAGATCAACCAACGAAGAAAACTCCACCTCCTGCCTCTGCGTCTTTTAGAAAACGACACAGAGGATCCTCATTTTGCATTTTGGATATCGAAAATGCTCCGATTCCTGAGTTCCCGGCTAATGAAGAGGTTGTCGGTGTAATAACCATGGAAGATGTTATAGAAGAACTCCTTCAGGAGGAGATCTTAGATGAAACTGATGAGTATGTGAATATCCACAACAGTTTGAGAGAAGAAATTCAAAGAAACAAAATGGAGTTGGAGCCGATGGCAATCGCTCGACTCGCTCGACAGGCTAAACGCCCTTATGGGTTCTGTGCGAAGATGACTGGAGTGGCCCTCTTGGGATTTTGCTTTATTGTTGTTTGGTCCACTTTTTCTTCTTCTTCCTCCTCTATAACTACCCAGAGGGAAAGCTTCGAAGACATTGGCGAACCAGTATCTGGAAATACAAGGGTAAGTAAATCGGGCGTTCAAACTGACGATAAGAGGGAAAGTAATAAGCACGAAGCTGTCATGTGCCCACTTGTAACAGAAGCGAGCAAGGATAAGTCTACAGTTAAATCTGATTTGGATAGTAAGGATGTAAAAAAGGTTAATCAATCTTCTTCTCTTTCTGCAAATGAGCCTGAATCTGGTAAAGAACATAGTAAAGAGGCAAATGGGGAAAATGACAAACTGAAGGGAAAGCTAATGGATGGGGAAACAAAAGAGAATCATAGGTCAGAAGAATCTGAGGGTGATGACTCTAAGAAAGAGAATGAAGAGGAGGAAGAAGTAGAAGATGGGAAAGGAGAAGAAGTTTCAGACAATGGTGAAACGGAAACAGAAGATGATCTCGTCGAGCCAGTGGATCACAGACGCGAAGAGACCGACGAGCCAATAACCAAACTGAAAAAGAAGAAGATAAAAGGTCCATTATTTGATTCTAAAGCTCAATACAATTGGAGGTTATGCAAAACTAGAAGCAAACACAATTATATTCCTTGTATCGACATTGAGATTGGAATGGGGAGGCTGCAGGCTTATCGGCATAAGGAGAGGAGTTGCCCCAGAGCACCTCCAATGTGTCTTGTGCCTCTCCCCCTTGGAGGGTATGAGCCTCCATTGCAATGGCCTGACAGCAAAATGAAGATAATGTACAATAATGTGGCACATCCGAAACTGGCTGCATTTGTGAAGAAGCATGATTGGTTGATGGATCTTGGAGAATTTCTTACGTTTCCTCAGAACCAGACGGAGTTCAAGGGGGGAGTTCTTCACTACCTCGAATCCATTGAAGAGATGGTACCGGATATTGAGTGGGGAAAGAATATTCGTGTAATACTAGAAATCGGTTGTACAGATTCGAGTTTAGGCATTTCCCTCCTCGATAAGGACGTCTTAACATTATCACTGGGCTTGAAGGACGACTTGGTCGACTTAGCCCAAGTCACGCTCGAGCGAGGAATTCCAGCCATAGTCAGTCCTTTCGAAAGTAGAAGACTTCCTTTTCCTAGTGGCGTTTTTGATGCTATTCATTGTGGCGAGTGCGGCATATCGTGGCAATCCAATGGTGGTAAGCTGCTGCTAGAAATGAACCGGATTTTAAGACCAACTGGATATTTCATTTTGTCGTCCAAGCATGACTCCATTGAAGAAGAAGAAGCCATGTCTACATTGACAGCTTCGATCTGTTGGAACATCCTGGCTCATAAAACCGATGATATCAGCGAAGTGGGTGTTAAGATATATCAGAAGCCTGAGTCAAATGATATATATGAGTTGAGAAGGAAGAAGAATCCTCCTCTTTGCAAGGAAAATGAAAATCCAGATGCAGCTTGGTATTTACCTATTAGAAGTTGCCTGCACCCCATTCCATCTTCCATTGAAGAACACGGAGCAGAGTGGCCAGAGGAATGGCCTAAGAGGCTGGAAACATACCCTGATTGGTTTAGCAACAAAGAAAAGGTAATTGCAGATACCAGCCACTGGAAAGCCATTGTCGACAAGTCCTATCTCTCTGGAATCGGTATCGACTGGTCTCGAGTAAGGAATGTGATGGACATGAAAGCTATCTATGGAGGATTTGCATCGGCTCTCACAGACCAGAAGGTGTGGGTGATGAATGTCGTCCCCATCCACGCACCCGATACACTTCCAATAATTTTTGAACGAGGCTTGGTTGGCGTCTACCATGATTGGTGCGAGTCTTTTGGTACTTATCCTCGATCGTATGATGTTTTGCATGCCGACCATCTTTTCTCGCGACTGAAGAACAGGTGCAGAGAACCCATATCGATCATTGTCGAGATGGATCGAATATTACGGCCAGGAGGGTGGATAAGGAGGGCATTTTGTGTGCAAGGAAAACCTCATGGCGGCCATAGCCCGGTATACTTGGAGCTCTATCGTGCTATTTCGATTAAGCTTCTTAGCTTTCAATGGAAGCAAAAGCCAGAAGGTAGAAGGTGA 3546 44.13 MAGDVQCCETEFFLYIVVIIGLVAFAGLMAGLTLGLMSLGLVDLEVLIKSGQLQDRLYAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDKIVPPWAAILLSVTLILMFGEILPQAICTRYGLKVGALMAPFVRVLLILFFPISYPISKVLDYMLGKGHAVLLRRAELKTFVHFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISNTYSLDLDTMLDLKTLNTIMSKGHSRVPVYLGRPTDIIGLVLVKNLLSVDPADAVILRKMIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVFKDLNEKNETTKKSKAHQEHNSKDSCEKQRSQSESLFKKDGVGPEAAQNDAKSASTVNNGDQPTKKTPPPASASFRKRHRGSSFCILDIENAPIPEFPANEEVVGVITMEDVIEELLQEEILDETDEYVNIHNSLREEIQRNKMELEPMAIARLARQAKRPYGFCAKMTGVALLGFCFIVVWSTFSSSSSSITTQRESFEDIGEPVSGNTRVSKSGVQTDDKRESNKHEAVMCPLVTEASKDKSTVKSDLDSKDVKKVNQSSSLSANEPESGKEHSKEANGENDKLKGKLMDGETKENHRSEESEGDDSKKENEEEEEVEDGKGEEVSDNGETETEDDLVEPVDHRREETDEPITKLKKKKIKGPLFDSKAQYNWRLCKTRSKHNYIPCIDIEIGMGRLQAYRHKERSCPRAPPMCLVPLPLGGYEPPLQWPDSKMKIMYNNVAHPKLAAFVKKHDWLMDLGEFLTFPQNQTEFKGGVLHYLESIEEMVPDIEWGKNIRVILEIGCTDSSLGISLLDKDVLTLSLGLKDDLVDLAQVTLERGIPAIVSPFESRRLPFPSGVFDAIHCGECGISWQSNGGKLLLEMNRILRPTGYFILSSKHDSIEEEEAMSTLTASICWNILAHKTDDISEVGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWYLPIRSCLHPIPSSIEEHGAEWPEEWPKRLETYPDWFSNKEKVIADTSHWKAIVDKSYLSGIGIDWSRVRNVMDMKAIYGGFASALTDQKVWVMNVVPIHAPDTLPIIFERGLVGVYHDWCESFGTYPRSYDVLHADHLFSRLKNRCREPISIIVEMDRILRPGGWIRRAFCVQGKPHGGHSPVYLELYRAISIKLLSFQWKQKPEGRR 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55375486 55383823 - BLOR01561 Blo01g01561 56001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01561 1181 MobiDBLite consensus disorder prediction 644 658 - -
Blo01g01561 1181 MobiDBLite consensus disorder prediction 547 561 - -
Blo01g01561 1181 Gene3D Vaccinia Virus protein VP39 783 964 IPR029063 -
Blo01g01561 1181 SUPERFAMILY CBS-domain pair 194 423 IPR046342 -
Blo01g01561 1181 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 459 1139 IPR004159 GO:0008168
Blo01g01561 1181 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 713 942 IPR029063 -
Blo01g01561 1181 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 983 1144 IPR029063 -
Blo01g01561 1181 PANTHER METHYLTRANSFERASE PMT28-RELATED 459 1139 - -
Blo01g01561 1181 MobiDBLite consensus disorder prediction 314 340 - -
Blo01g01561 1181 MobiDBLite consensus disorder prediction 354 374 - -
Blo01g01561 1181 MobiDBLite consensus disorder prediction 575 612 - -
Blo01g01561 1181 MobiDBLite consensus disorder prediction 501 658 - -
Blo01g01561 1181 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Blo01g01561 1181 Pfam Cyclin M transmembrane N-terminal domain 18 189 IPR002550 -
Blo01g01561 1181 CDD CBS_pair_CorC_HlyC_assoc 205 305 IPR044751 -
Blo01g01561 1181 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 690 1139 IPR004159 GO:0008168
Blo01g01561 1181 Gene3D - 376 429 IPR046342 -
Blo01g01561 1181 Gene3D - 189 324 IPR046342 -
Blo01g01561 1181 MobiDBLite consensus disorder prediction 314 383 - -
Blo01g01561 1181 MobiDBLite consensus disorder prediction 613 643 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01561 - - - gra:105766830 1533.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01561 Blo-Chr1:55375486 Blo06g00330 Blo-Chr6:19139776 1.32E-169 dispersed
Blo04g01383 Blo-Chr4:32978750 Blo01g01561 Blo-Chr1:55375486 1.95E-141 transposed
Blo13g00274 Blo-Chr13:13747496 Blo01g01561 Blo-Chr1:55375486 1.08E-154 transposed
Blo01g01561 Blo-Chr1:55375486 Blo12g00909 Blo-Chr12:27268840 0 wgd
Blo01g01561 Blo-Chr1:55375486 Blo04g01000 Blo-Chr4:13052512 3.48E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g193 Blo01g01561 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0810 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g941 Blo01g01561 . Bda01g00531 . Bpe02g00393 . . Bma01g02319 . . Cma01g01907 . Car01g01489 . . . . . . . . . . . . . . . . . . Cone4ag1910 Cone7ag1824 . . Lsi04g01660 Csa03g04205 Chy04g00513 . . . . . . . . . . Cmo01g01970 . . . . . . Cpe02g00129 . . . . . . . Cla05g01944 Cam05g2087 Cec05g2100 Cco05g2154 Clacu05g2082 Cmu05g1958 Cre05g2077 . . . Cme04g00572
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01561 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 3.045625 0.0 0.630944 0.0 0.0 0.0