Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01562 ATGCGTGAAGGTGAGGGCAAGTGGGGTCTGTGTTACGGTTCTTCAACAGTTGCGTTTTCATCTGAAAAACATGAAGGCTCCCTGCATGAATTGAGACCCAATGGTACTGCCTACGGAGCTGTATTTAATCTCTCCAACAATTTGTTCTATGGTTATTTGAATGCTTCTCTGAAATCATATGGCTCCATCGATTTGAGCCGAAACTATTTCCAAGGAGAAATACTCAATGATAGTGGAAGCAATGCTATTCTAAGTGGTAATTGCCTGCAAATGGTGCCAGATCAAAGGAGTGTCGAGGATTGTGCACTTTTCTATTCTGGTACAGGCATGTCTTTTGATGGATTGCCCAGAGTAAGCGCCTCAACAAAGAACAATCGATCGAAGTTTATACGGATCGGATTATTTTCTGGGTTGGGCTTCGTAGTGATTTTTGTATCAATGCTTGTCATTCTTTTACTTGCTCGTAATAGACGCATTAAGAATCGCAGAGGAAATGCAAATGGAGGTCCTGTTTCAAAAGAAGAGAGTCCTTCTCGTCCAAAAGATTCCGTCTTCTTATCTGGTCTTAAAGATTCATTTACGTACGACCAGATTCTTCGCTGCACTGATAACTTCAGTGAATCTAATCTCATGAAACACGGCCATTCAGGAGACCTGTTTCGTGGCCGTTTGGAGCGTGGGCAGTCTGTTGTTGTCAAAATGGTTAGTTCTGATTCGTTGAAGAACGAATCGTATTTGAGGGAACTAGAGTTTTTAACCAAATCATCGCATCCGAAACTTGTCCCGCTTTTGGGGCACTGCCTCTATCACGAGACGAACAAAGTTTTAGTTTATAAATACATGCCTCATGGAGACTTGGCTACTTTCTTGCACAAAGCAACCAACTCCGTCGATGACAATGCGCAGACTTTGGATTGGATCACCAGATTAAAAATTGCAATTGGCGCTGCAGAAGCCCTTTCTTACCTGCATCACGAATCCAACCCTCCTACTGTCCACAGGGATGTTCAAGCCAGCAGTATCCTTCTCGATGACAAATTCGAGGTTCGGCTAGGGAGCTTAAACGAGCTTTGTCCCAAGGAAGGAGATCACCACCAAAATGTGCTCGCGAGACTGAGGCGGAAATCACAAACCTCAGAGCCTGGCCCTTCTGGTTCGTCAATGGCGACTTGTGCTCAAGACGTTTACTGCTTTGGAATGGTCTTATTGCAGCTTGTGACTGGAAAACTTGGAATTAGCGAATTAGACAATAGCTTGAGTAAAGAGTGGCTTAAAAGAACGATGGAAAGTATCAGCCTGCACGACAAAGATCTGGTGATGAAGATTGTCGACCCGTCTCTAATGGTGGACGAGGATCTCTTAGAAGAGGTATGGGCGATGGCAGTTGTGGCAAAGAATTGCCTAAATCCGAAGCCTTCGAGGCGGCCAATAATGAGGCACATCTTGAAAGCATTGGAAAACCCTTTAAAAATTGTGCGAGAGGAGAGTTGTAGCTCTATAAGGCAGTCTTGGAGTGCTGCTTTTTTTGGGAGCTGGGGACAAAGCTCGTCGGATGGAACTTCGGGCAGCCATGGAAATAAAGAGAGTTCAAGTGGGTCAAAGCAAGCAGGAAGGGTAGGCTCCCATGGAAGCGGTGGAAATGACTTATCTTCCTCAAATAAGAGGTCTAGTGAGATTTTTCCTGAACCAGTGGAAACCCATGATATGGAGAGGCAAGGATGA 1722 44.77 MREGEGKWGLCYGSSTVAFSSEKHEGSLHELRPNGTAYGAVFNLSNNLFYGYLNASLKSYGSIDLSRNYFQGEILNDSGSNAILSGNCLQMVPDQRSVEDCALFYSGTGMSFDGLPRVSASTKNNRSKFIRIGLFSGLGFVVIFVSMLVILLLARNRRIKNRRGNANGGPVSKEESPSRPKDSVFLSGLKDSFTYDQILRCTDNFSESNLMKHGHSGDLFRGRLERGQSVVVKMVSSDSLKNESYLRELEFLTKSSHPKLVPLLGHCLYHETNKVLVYKYMPHGDLATFLHKATNSVDDNAQTLDWITRLKIAIGAAEALSYLHHESNPPTVHRDVQASSILLDDKFEVRLGSLNELCPKEGDHHQNVLARLRRKSQTSEPGPSGSSMATCAQDVYCFGMVLLQLVTGKLGISELDNSLSKEWLKRTMESISLHDKDLVMKIVDPSLMVDEDLLEEVWAMAVVAKNCLNPKPSRRPIMRHILKALENPLKIVREESCSSIRQSWSAAFFGSWGQSSSDGTSGSHGNKESSSGSKQAGRVGSHGSGGNDLSSSNKRSSEIFPEPVETHDMERQG 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55385654 55391009 - BLOR01562 Blo01g01562 56002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01562 573 Pfam Protein tyrosine and serine/threonine kinase 211 484 IPR001245 GO:0004672|GO:0006468
Blo01g01562 573 ProSiteProfiles Protein kinase domain profile. 205 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g01562 573 PANTHER RECEPTOR-LIKE PROTEIN 55 20 525 - -
Blo01g01562 573 Gene3D Phosphorylase Kinase; domain 1 169 280 - -
Blo01g01562 573 MobiDBLite consensus disorder prediction 515 573 - -
Blo01g01562 573 PANTHER - 20 525 - -
Blo01g01562 573 MobiDBLite consensus disorder prediction 515 559 - -
Blo01g01562 573 MobiDBLite consensus disorder prediction 163 182 - -
Blo01g01562 573 SUPERFAMILY Protein kinase-like (PK-like) 181 485 IPR011009 -
Blo01g01562 573 Gene3D Transferase(Phosphotransferase) domain 1 281 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01562 - - - vvi:100259194 664.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01562 Blo-Chr1:55385654 Blo15g00695 Blo-Chr15:21890740 3.12E-173 dispersed
Blo01g01562 Blo-Chr1:55385654 Blo04g00511 Blo-Chr4:4336074 2.77E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g947 Blo01g01562 . Bda01g00529 . Bpe02g00391 Bpe04g00214 . . . . Cma01g01910 Cma09g00158 Car01g01491 . . Cpe06g00113 . . . . . . . . . . . . . . . Cone4ag1911 Cone7ag1825 . . Lsi04g01665 Csa03g04208 Chy04g00510 . . . . . . . . . . Cmo01g01972 Cmo09g00157 . . . Car09g00140 . Cpe02g00127 . . . . . . . Cla05g01941 . . . . . . . . . Cme04g00565
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004382 1 6 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84116 PF07714 PK_Tyr_Ser-Thr 4.90E-25 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01562 Blo_Chr01 FPKM 0.429746 0.0 0.221943 0.391212 8.432973 6.550599 6.609475 0.776339 0.8583 0.652173