Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01563 ATGGCGTCTGGATCGACATGGACGGCAAAACAAAACAAGCTGTTCGAGAATGCGTTGGCAACTTTCGACGAGGATTCTCCGGACAGGTGGGTTAATCTGGCGAGGGCGGTCGGAGGGAAATCTGTCGAGGAAGTGAAAATGCACTACGAAATGCTCGTTGAAGATGTCAACAAGATTGAATCCGGCCAAGTTCCTTTACCCCATTACATAAAACACGGCAAAGGATACAATAACTACATGCACGAACAACCGAGCATGTTATCAAGACAGATGAAGCTCTCTTCCATGGCGACTACAACTGCGGATCACTATCACGAAAATAAGAAAATACTAATTGTCATTGTTATTAGGTTTACTCAATCACATTCTCCACCGATCCGAGCCCAGTCCGATATTTCTAAAGCAGCGCAAAAGTACGAGCAAATTGTAGGAGTCGAAGAGGAACTTCGAAACGACGGCGTATTCTTTCTAGCTGAAGGCTCTGGGGGTAGTACTGGGGAGCTATCGTCAAAAGGAGGAAGAGAAGGAGAAGGAGAAGAGGATTTGAATCTCTTCCATATGGGCGAGCAAACGCACGTGCAAGTTCAGATTCAACCCCATAGCCAATCACCGACGCAATCTCAGAGCCAATCTCTGTCTCAGTCCGCTATTGAGGTTCAAAGACTTATTGATTCGGCCAATGTCGCCATTAATATAGCTCAACCTTCAACGACGTGCGAGGTTTCAAATGCTCCTTCGAAAACATCCTCTCCTCCATCAAAAATCCCTTTTCGTCCTCGTAAGATCAGAAAGCTCTCACCCGAAAACTCTGAATCGAATTCTCCTCAAATCCTCTTACCCCTTGAGAACCCGAAACCCGTTGCCAGTTTAAGGCCGGCAAAGAATAAGGTTTTGCCGCAACGCGCCCTCGTTGTTGCCCCTCCGCGAATCGTAGCGCGCTCGCTCTCTTGCGAAGACGAGATTGAAATCGCTCTACGCCATCTCAGAGCTGCAGATCCGCGTCTGGGGCCTTTGATAGATCATCATCAGCGTCCTACTTTTGATAATTTCCGCACTCCGTTCCTTGCCCTAGCCAGAAGTATTCTTTATCAGCAACTCGCTTACAAAGCTGGCACATTGATATACAGCCGCTTCATTGACCTTTGTGGCGGTGAGTCCGGTGTTGTCCCAGAAACTGTTCTTGCACTGTATCCTCAACCACTTAGAAATATTGGGGTCTCTAGTCGTAAAGCTAGTTATCTTCATGACCTTGCAAAGAAGTACCAAAATGGGATTTTGTCGGATTCTGCTATTGTGAATATGGATGATAAATCACTTTTCACTATGCTCACAATGGTAAATGGGATTGGGTCTTGGTCAGTTCACATGTTCATGATTTTCTCGCTGCACAGACCCGACGTACTTCCTATAAATGATCTCAACGTTCGTAAAGGGGTTCAACATCTATACAATCTTGAAGAGTTACCTAGACCATCCCAGCTGGATCAGTTGTGCGAGAATTGGAAGCCGTATCGTTCTGTTGGGTCGTGGTATATGTGGAGACTTGCTGAAGCTAGGGGTGCTTCTTCTAGTGCGGCCGCAATGGCTGCTTGTGCTAGTCTGCCGCAGCAACGGCAGGAACAACAGCAGGAGCACCAACATCAGCAGCTTCTTGATCCAATCAATAGCATTCTCAATCTTGGGTATGATTCTCTTTTCAAATTTTAA 1707 46.46 MASGSTWTAKQNKLFENALATFDEDSPDRWVNLARAVGGKSVEEVKMHYEMLVEDVNKIESGQVPLPHYIKHGKGYNNYMHEQPSMLSRQMKLSSMATTTADHYHENKKILIVIVIRFTQSHSPPIRAQSDISKAAQKYEQIVGVEEELRNDGVFFLAEGSGGSTGELSSKGGREGEGEEDLNLFHMGEQTHVQVQIQPHSQSPTQSQSQSLSQSAIEVQRLIDSANVAINIAQPSTTCEVSNAPSKTSSPPSKIPFRPRKIRKLSPENSESNSPQILLPLENPKPVASLRPAKNKVLPQRALVVAPPRIVARSLSCEDEIEIALRHLRAADPRLGPLIDHHQRPTFDNFRTPFLALARSILYQQLAYKAGTLIYSRFIDLCGGESGVVPETVLALYPQPLRNIGVSSRKASYLHDLAKKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLNVRKGVQHLYNLEELPRPSQLDQLCENWKPYRSVGSWYMWRLAEARGASSSAAAMAACASLPQQRQEQQQEHQHQQLLDPINSILNLGYDSLFKF 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55391219 55394320 + BLOR01563 Blo01g01563 56003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01563 568 SMART endo3end 362 517 IPR003265 GO:0006284
Blo01g01563 568 MobiDBLite consensus disorder prediction 237 253 - -
Blo01g01563 568 Gene3D Hypothetical protein; domain 2 351 464 - -
Blo01g01563 568 Gene3D - 326 514 - -
Blo01g01563 568 MobiDBLite consensus disorder prediction 237 280 - -
Blo01g01563 568 SUPERFAMILY DNA-glycosylase 344 515 IPR011257 GO:0003824|GO:0006281
Blo01g01563 568 CDD SANT 6 53 IPR001005 -
Blo01g01563 568 MobiDBLite consensus disorder prediction 160 179 - -
Blo01g01563 568 SUPERFAMILY Homeodomain-like 5 61 IPR009057 -
Blo01g01563 568 Pfam HhH-GPD superfamily base excision DNA repair protein 359 502 IPR003265 GO:0006284
Blo01g01563 568 PANTHER BNAC05G15000D PROTEIN 187 562 - -
Blo01g01563 568 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 187 562 - -
Blo01g01563 568 Gene3D - 1 66 - -
Blo01g01563 568 SMART sant 3 55 IPR001005 -
Blo01g01563 568 CDD ENDO3c 354 515 IPR003265 GO:0006284
Blo01g01563 568 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01563 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - csv:101202943 476.092
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01563 Blo18g00814 CCT
Blo01g01563 Blo17g00801 CCT
Blo01g01563 Blo18g00814 ECH
Blo01g01563 Blo17g00801 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01563 Blo-Chr1:55391219 Blo15g00697 Blo-Chr15:22003483 9.41E-30 dispersed
Blo01g01563 Blo-Chr1:55391219 Blo01g01565 Blo-Chr1:55410342 1.12E-23 proximal
Blo06g00134 Blo-Chr6:5417651 Blo01g01563 Blo-Chr1:55391219 2.55E-94 transposed
Blo12g00907 Blo-Chr12:27253741 Blo01g01563 Blo-Chr1:55391219 0 transposed
Blo01g01563 Blo-Chr1:55391219 Blo12g00906 Blo-Chr12:27248526 6.91E-21 wgd
Blo01g01563 Blo-Chr1:55391219 Blo17g00801 Blo-Chr17:25764580 3.52E-31 wgd
Blo01g01563 Blo-Chr1:55391219 Blo18g00814 Blo-Chr18:24108441 4.14E-34 wgd
Blo01g01563 Blo-Chr1:55391219 Blo04g00513 Blo-Chr4:4358437 7.19E-23 wgd
Blo01g01563 Blo-Chr1:55391219 Blo05g00797 Blo-Chr5:29270400 1.57E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g948 Blo01g01563 . Bda01g00528 . Bpe02g00390 . . Bma01g02321 . . Cma01g01911 Cma09g00157 Car01g01492 . Sed05g2314 Cpe06g00112 . Bhi04g00244 Tan02g0788 Cmetu01g0968 . Hepe02g0493 . Lcy13g1988 . . . . . . . Cone4ag1912 . Cone17ag1343 Cone20ag0138 Lsi04g01666 Csa03g04211 Chy04g00508 . Blo17g00801 Blo18g00814 Bda08g01283 Bda01g01494 Bpe02g01690 Bpe05g00091 Bma01g00763 . . Cmo01g01973 Cmo09g00156 . . . Car09g00139 . Cpe02g00126 . . . . . . . Cla05g01939 Cam05g2083 Cec05g2096 Cco05g2147 Clacu05g2079 Cmu05g1953 Cre05g2074 . . . Cme04g00564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005031 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38