Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01566 ATGCAGATATGTAGCATTCTGGTGGATGTTAGGTCAGCCGAGTTTTCATTAGACCCTGATGAAGTTGAGGCTGGGATGATTTTGCAAAGACTGCTTCGGCAGGATATATCTCCATCCAATACATTTAACAGTTTAGAATTCGACGTTATTCAAGTTGCTGCTCAAAAGCTGAACCTAATTTCAAGCAACTCCATTTTGATAGAGAAAAAGTCCATTCAAGAAGAACTCGAGAAATCTCATTGTACAGAGCAAAAAAAAAAGAAAATCTTGAAATACTTCATGTATCTTTTAAGAAAGTATGATGAATTACTTGTTCAACAACAAAATGGGAGCATTGAGCCTCCATCATCAACAGTAAGTGTGCAGGTGAAAAGTCAAGTTTGTACCTCTGAAACTAGTATTCCAGAACCTCCAGGGGAATTTAAATGCCCCATTTCTAGTAGATTGATGCACGATCCTGTGATTATTTCATCTGGTCGGACATTTGAACGAATGTGGATTCAGAGGTGGATAGACGATGGTAATACAATTTGCCCAATAAGTGGTGCAAAGCTAGGGGATTTGTCGCTGGTTCCAAACTCAGTAATAAAATGCCTCATTTCTGGATGGTGTAGGAGATATGAGACTACAATTCCTGACCCTTGCTTACAACCAATACCTGCTTTGTTTGTTCCCTCATTAAATATTTCATATTCTAGTTCCATGAATAGTTTAGGCAGTCGTCTGAGTGACTTGGACCGTCAAACTAGAAATGTGTCATCTTGCTCTTCAAACATGAATTGTGATGCAGGTTTTTCAGATGAAAAATGTCAAAGATTTCAACAGTCTGCCAATACTTGTTGCACTGTTATAAATCTTGTTTCCTCATGTGATGCACCATCATGGGCATCTCAATGCAAAGCAGTCTACAATTTGAGAGAGCTGCTCGAGGACAATGAAGGAGCATGCCATTCAGCTGTTTCTGTATGCATTGCCAAGCCACTGATTAGCTTTTTGAAAAATGCCCTTATTTTAGGTGATGTAGAAGCACAAAGAGCTGGAACAGAGCTCCTTCTGGCCATCATGAGTAACAACAGAGATGAATTAATTGACCTGGAAGAAGATGAAGTTCTCGTCCTGGCAGCATTTCTGGATTCTGATATGGCCGGAAAAAACCTTGCAATCTGGGAAATTTTGTCTTGGCAACAGCAATTCAAATCTTTGATGGTGGCTTCTGGTCTTCTTCCCCTCATCTTAGGAGTCTTGAACACTGAAGTAGTTGAATCTCGTGTTCTAGCTTTGAAGATACTTCATAACCTTTCACGCAACTGTAGTATGGAGTACCATTCAGCATATGTGGAGTATATTCCAAAATTGATTCAATTTATGGGGGATCCCATTATTGCAGAGTCCTGCATTGAGATAATAAAAAATCTGTGTGATTCAGGAGGGAGTAGTGGACTGTACAAAACAAATTCATGCATCACTGAAATTGCTGGATTCCTCGTAACTGGGACAATGGTACAAGAATATACAGCCGATGTTCTTCATTCTCTGTGTTATGAAAGAGAGGAGTACATCCCATTAATTGTAAAAGAGAATGTATTTCAACCTTTGGTCCATATGTCTAAAAATGGGAGTTACAGAGGAAAAGTGATTGCCGCAGAATTGCTCCAGCTCTTGGGACATACCTCTAATGGCGCTGGGCTTGTTGATGGTTGGAGAAGCAGTGGGAATGTGTGGAAAGTGCCAGAAATGGAGGGCAGCCTGAAAATGGAAGAAGAAAAGGGTGGGAAAGAAGAGTGGAAGACAGCACAGAGAGAGGCAAGTGTATTGAGATACAAAGAGAAGAGGCAAAGTAGGCTGGCTGTTCGCGAAGAGGATTCGTTACGAGGTTCGCCAAGTGTATTGAAATGGCAGTTTAGCCAGTCTTCGTCGCTGCAAGCTTGTCTGAACGGAGTGGGAACAGATGAAATCCATGGGTTTCTTCAGTCCGATGGCTTTGCCAAGAAGGTGACAATTGGAAACGGCGTACAGGTGTAG 2022 41.2 MQICSILVDVRSAEFSLDPDEVEAGMILQRLLRQDISPSNTFNSLEFDVIQVAAQKLNLISSNSILIEKKSIQEELEKSHCTEQKKKKILKYFMYLLRKYDELLVQQQNGSIEPPSSTVSVQVKSQVCTSETSIPEPPGEFKCPISSRLMHDPVIISSGRTFERMWIQRWIDDGNTICPISGAKLGDLSLVPNSVIKCLISGWCRRYETTIPDPCLQPIPALFVPSLNISYSSSMNSLGSRLSDLDRQTRNVSSCSSNMNCDAGFSDEKCQRFQQSANTCCTVINLVSSCDAPSWASQCKAVYNLRELLEDNEGACHSAVSVCIAKPLISFLKNALILGDVEAQRAGTELLLAIMSNNRDELIDLEEDEVLVLAAFLDSDMAGKNLAIWEILSWQQQFKSLMVASGLLPLILGVLNTEVVESRVLALKILHNLSRNCSMEYHSAYVEYIPKLIQFMGDPIIAESCIEIIKNLCDSGGSSGLYKTNSCITEIAGFLVTGTMVQEYTADVLHSLCYEREEYIPLIVKENVFQPLVHMSKNGSYRGKVIAAELLQLLGHTSNGAGLVDGWRSSGNVWKVPEMEGSLKMEEEKGGKEEWKTAQREASVLRYKEKRQSRLAVREEDSLRGSPSVLKWQFSQSSSLQACLNGVGTDEIHGFLQSDGFAKKVTIGNGVQV 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55421353 55425313 + BLOR01566 Blo01g01566 56006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01566 673 Gene3D - 268 565 IPR011989 -
Blo01g01566 673 SMART Ubox_2 140 203 IPR003613 GO:0004842|GO:0016567
Blo01g01566 673 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 559 - -
Blo01g01566 673 CDD RING-Ubox_PUB 141 182 IPR045210 -
Blo01g01566 673 Pfam U-box domain 138 205 IPR003613 GO:0004842|GO:0016567
Blo01g01566 673 SUPERFAMILY ARM repeat 288 555 IPR016024 -
Blo01g01566 673 SUPERFAMILY RING/U-box 129 213 - -
Blo01g01566 673 ProSiteProfiles U-box domain profile. 136 210 IPR003613 GO:0004842|GO:0016567
Blo01g01566 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 211 IPR013083 -
Blo01g01566 673 PANTHER U BOX DOMAIN-CONTAINING 2 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01566 - - - qlo:115974350 419.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01566 Blo-Chr1:55421353 Blo06g00829 Blo-Chr6:31531339 3.79E-50 dispersed
Blo03g01352 Blo-Chr3:39944691 Blo01g01566 Blo-Chr1:55421353 1.49E-13 transposed
Blo11g00636 Blo-Chr11:6596371 Blo01g01566 Blo-Chr1:55421353 2.82E-27 transposed
Blo01g01566 Blo-Chr1:55421353 Blo16g00047 Blo-Chr16:1887921 4.57E-82 wgd
Blo01g01566 Blo-Chr1:55421353 Blo04g00915 Blo-Chr4:10711448 4.14E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g956 Blo01g01566 . . . Bpe02g00386 . . Bma01g02326 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017270 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01566 Blo_Chr01 FPKM 8.599244 8.273232 13.313 12.246136 16.681858 19.41367 17.729965 19.609339 20.598679 21.490404