Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01567 ATGCCATTCAAAAGCGTAGTTCGTGAAATAAGAGAGAGTATTGGAAACCTAAGAAGAAAATGGGAAGAAGGAAGACCTTTACGCCATCCAGGAAAATCACATATCGCACCGGAGCAGCCTCCCTGTTCATCGTCGCCTTCTTTAATTCCACAGAGCCGATGGGCGAGTTTGCCTACCGAGTTGATTCTAGACATAATTCAAAGAGTTGAATCAAGCGAAACCTCCTGGCCTGGCAGGAGAGATGTTGTTGCTTGTGCTTCAGTTTGTAAATCATGGAGGGAGATTGCTAAAGGAGTTGTTAAAACCCCCGAGAACTCTGGCTTGCTTACCTTTCCCATCTCCCTCAAACAGCCGGGACCAAGAGAGACACCAATCCAGTGCTTTATAAGGAGGGACAGATCAAACTCTACATATCGACTCTATCTCGGTCTAAGTCCAGCCCTGTCCGGCAACATGAGCAAGTTGTTACTAGCCGGAAGGAAAGTCCGACGGGCAACCCATACCGATTTCATAATATCCTTTGTCGCTGATGATTTCTCCCGAGCAAGCAATACTTACATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAATATTCGATAGTCAACCCCCACTGGATCCGACTATGCAAACAACTTCTAGTTCGCAACGAAATGTCCATTTAAAGCAGGTTTCTCCGAGAGTAACTGTCGGAGACTATAATGTTTCTTCTATATCTTATGAGCTCAATGTCCTTCGAACCAGAGGTCCGAGGAGAATGCAGTGCAGTATGAATTCAATACCTGTTTCATCCATTCAAGAAGGCGGCACAGCCCCTACTCCAACCGAATTTATCAAATGTCTCGACCAGAAACAAGATCCTCCATTGACATTAGCCAAGAAAAAGAAGCAACAAGTCGAGTTTAGTCTCACTAGTCTATCCGAGCCTCTCCTCCCTGTTCATTCTCCACTTGTTTTGAAAAATAAAGCTCCGAGATGGCACGAGCAGCTCCAGTGTTGGTGCCTGAACTTCAGAGGACGGGTAACAGTCGCTTCCGTCAAAAATTTCCAGCTCGTGGCATCGGCTGATGTTCATCAAAATATTTCAGGGGCTGAACAGGAGAAAGTGATTCTTCAATTTGGTAAAATTGGGAAAAACATATTCACCATGGATTATCGATATCCACTATCCACATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCTGCCTGTGAATGA 1239 44.63 MPFKSVVREIRESIGNLRRKWEEGRPLRHPGKSHIAPEQPPCSSSPSLIPQSRWASLPTELILDIIQRVESSETSWPGRRDVVACASVCKSWREIAKGVVKTPENSGLLTFPISLKQPGPRETPIQCFIRRDRSNSTYRLYLGLSPALSGNMSKLLLAGRKVRRATHTDFIISFVADDFSRASNTYIGKLRSNFMGTKFSIFDSQPPLDPTMQTTSSSQRNVHLKQVSPRVTVGDYNVSSISYELNVLRTRGPRRMQCSMNSIPVSSIQEGGTAPTPTEFIKCLDQKQDPPLTLAKKKKQQVEFSLTSLSEPLLPVHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADVHQNISGAEQEKVILQFGKIGKNIFTMDYRYPLSTFQAFAICLSSFDTKPACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55426131 55427757 - BLOR01567 Blo01g01567 56007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01567 412 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Blo01g01567 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Blo01g01567 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Blo01g01567 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Blo01g01567 412 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Blo01g01567 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Blo01g01567 412 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Blo01g01567 412 MobiDBLite consensus disorder prediction 22 49 - -
Blo01g01567 412 Gene3D - 49 99 - -
Blo01g01567 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Blo01g01567 412 Pfam F-box domain 54 100 IPR001810 GO:0005515
Blo01g01567 412 Gene3D Tubby Protein; Chain A 112 412 IPR025659 -
Blo01g01567 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Blo01g01567 412 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Blo01g01567 412 Pfam Tub family 115 407 IPR000007 -
Blo01g01567 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 412 - -
Blo01g01567 412 PANTHER TUBBY-RELATED 1 412 - -
Blo01g01567 412 MobiDBLite consensus disorder prediction 205 224 - -
Blo01g01567 412 SUPERFAMILY Tubby C-terminal domain-like 103 412 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01567 Blo12g00905 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01567 Blo-Chr1:55426131 Blo01g01728 Blo-Chr1:57017987 6.51E-159 dispersed
Blo01g01567 Blo-Chr1:55426131 Blo12g00905 Blo-Chr12:27242887 0 wgd
Blo01g01567 Blo-Chr1:55426131 Blo16g00048 Blo-Chr16:1891899 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11935 PF01167 Tub 4.40E-104 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01567 K19600 - zju:107420271 612.068