Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01571 ATGGCGGCGATTTGGTCTAACAGTGTTGTTTGCCCAAAGAAACCAGGTCCGTCCAATCAAGTTACTTCTTCCGATGAGATTCTCCGACTGCCGGCGAAATTATCAAGCAAGTTTTCGGGCCTTAATGTCTCTTATCTGTCAAGTTCTCTCGCTCGACCTGCGAGAATCTCATGTCAGACCTCGTTTGCTTCTCCTGCTTCGATTTCCGCAAGTGAGAAAGCTGGGCTGAAAGATTTTCTTCACATTAGTGATTTTGATAAGTCCACCATTTTGAAGATCTTAGATCGTGCTGCTGAAGTCAAGACACGGTTAAAATCTGGAGATAGATCTTTTCTCCCATTTAAGGGGATGTCAATGGCAATGATCTTTGCAAAACCATCCATGAGAACTAGGGTTTCATTTGAGACTGGGTTTTTCTTGCTAGGGGGGCATGCAATATATTTAGGGCCTGATGATATCCAGATGGGGAAGCGAGAGGAAACTCGTGATGTTGCTCGTGTTTTGTGTCGCTATAATGACATTATTATGGCACGTGTATTTGCTCATCAGGACATTCTTGATTTAGCTAAATATTCAACTGTGCCTGTCGTCAATGGGCTGACTGACTACAACCACCCCTGCCAAATAATGGCGGATGCTCTCACCATAATTGAACATATAGGCCGGTTAGAGGGTACCAAGATTGTCTATGTTGGAGATGGAAATAATATCGTGCACTCGTGGTTGTTGATGGCATCTGTGGTACCTTTTCACTTTGTGTGTGTCTGTCCTAAAGGGTTTGAGCCCGATCAGGAAACAGTTGAAAAAGCACGCCAAGCAGGAATTAGCAAGATCGAGATAAGTTATGATCCAAAGGAAGCCGTCAAAGGAGCTGATGTGATATACTCAGATGTCTGGGCCAGCATGGGACAGAAGGAAGAGGCTGCATATCGATGTCAAGCATTTCAAGGATTTCAGGTGGATGAAGAAGTCATGAAATTAGCTGGGCCACAAGCGTATTTCATGCACTGTTTACCGGCAGAGAGAGGGGTAGAGGTGACCAATGGAGTCGTTGAAGCTCCCAACTCAATTGTCTTCCCACAAGCAGAGAATCGCATGCACGCCCAAAATGCCATTATGCTACATGTGCTCGGCCTGTGA 1140 45.18 MAAIWSNSVVCPKKPGPSNQVTSSDEILRLPAKLSSKFSGLNVSYLSSSLARPARISCQTSFASPASISASEKAGLKDFLHISDFDKSTILKILDRAAEVKTRLKSGDRSFLPFKGMSMAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDDIQMGKREETRDVARVLCRYNDIIMARVFAHQDILDLAKYSTVPVVNGLTDYNHPCQIMADALTIIEHIGRLEGTKIVYVGDGNNIVHSWLLMASVVPFHFVCVCPKGFEPDQETVEKARQAGISKIEISYDPKEAVKGADVIYSDVWASMGQKEEAAYRCQAFQGFQVDEEVMKLAGPQAYFMHCLPAERGVEVTNGVVEAPNSIVFPQAENRMHAQNAIMLHVLGL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55455270 55457814 - BLOR01571 Blo01g01571 56011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01571 379 PRINTS Ornithine carbamoyltransferase signature 356 367 IPR002292 GO:0016743
Blo01g01571 379 PRINTS Ornithine carbamoyltransferase signature 194 208 IPR002292 GO:0016743
Blo01g01571 379 PRINTS Ornithine carbamoyltransferase signature 154 167 IPR002292 GO:0016743
Blo01g01571 379 PRINTS Ornithine carbamoyltransferase signature 294 304 IPR002292 GO:0016743
Blo01g01571 379 PRINTS Ornithine carbamoyltransferase signature 121 135 IPR002292 GO:0016743
Blo01g01571 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 205 216 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo01g01571 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 342 365 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo01g01571 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 330 339 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo01g01571 379 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 123 142 IPR006130 GO:0006520|GO:0016597|GO:0016743
Blo01g01571 379 Gene3D Aspartate/ornithine carbamoyltransferase 208 364 IPR036901 GO:0006520|GO:0016597|GO:0016743
Blo01g01571 379 Gene3D Aspartate/ornithine carbamoyltransferase 79 373 IPR036901 GO:0006520|GO:0016597|GO:0016743
Blo01g01571 379 TIGRFAM orni_carb_tr: ornithine carbamoyltransferase 77 377 IPR002292 GO:0016743
Blo01g01571 379 Hamap Ornithine carbamoyltransferase, catabolic [argI]. 76 378 IPR024904 GO:0004585|GO:0006591
Blo01g01571 379 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 15 379 - -
Blo01g01571 379 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 76 378 IPR036901 GO:0006520|GO:0016597|GO:0016743
Blo01g01571 379 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, CHLOROPLASTIC-LIKE 15 379 - -
Blo01g01571 379 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 77 218 IPR006132 GO:0006520|GO:0016743
Blo01g01571 379 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 224 375 IPR006131 GO:0006520|GO:0016597|GO:0016743
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01571 K00611 OTC, argF, argI; ornithine carbamoyltransferase [EC:2.1.3.3] - zju:107420225 590.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01571 Blo-Chr1:55455270 Blo10g00843 Blo-Chr10:26889489 4.47E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g970 Blo01g01571 . Bda01g00522 . Bpe02g00382 . . Bma01g02329 . . Cma01g01919 Cma09g00147 Car01g01500 . . Cpe06g00103 . . . . . . . . . . . . . . . . . . Cone20ag0133 Lsi04g01689 Csa03g04229 Chy04g00486 . . . . . . . . . . Cmo01g01982 Cmo09g00145 . . . Car09g00131 . Cpe02g00117 . . . . . . . Cla05g01923 Cam05g2060 Cec05g2073 Cco05g2124 Clacu05g2054 Cmu05g1931 Cre05g2054 . . . Cme04g00545
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01571 Blo_Chr01 FPKM 23.104551 27.342911 48.993382 48.402744 47.788059 51.926262 47.461517 29.479712 28.302128 25.993099