Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01575 ATGCTTGACCGGGCGGCCCACGACTACTTACGTGGAATAGTTGTGACATCTTGGGCCAAACATGCCTTCGGCTCCCACCCAAAGTGCGACATAAGCCTTAACAATTTGAGTAAGTCATTCAACGCCTGCATCCTACCAGCCCGGGACAAACTGATTCTAAGTATGTTTGAGATCATCCGGAAGGGCATCATGGGTAGGATTGTGAAAAAAAATGAAAAGATGGCTCACTCGACGGACCTTTTGTGTCCAAAGATCAGCACTCGGCTCGCCAAACTACAACTTGCCGGGCAAAATTGGAGCCCCAAGTTTTCAAGAGCTGCCCAGTTTAAGGTCAGCAATGGTAACGAACAATACTCTGTCGATTTGGACAGGCGTACTTGTACATGTTACCGGTGGGAGTTGACCGGCATCCCATGTGTCCATGCAGTCCCGTGCATTCACTTCATGAGGAGATACCCTGAGGAGTTTGTGCATGCGTACTATCATCGGGAAACATACATGGCGATGTACTCCCACTTTCTCCGGCTCGTCAATGGACTGATCAAGTGGCCTCCGGTGATGAATCTTGATCCTATTATCCCACCACCATTTAAAAGGCTTCCAGGAAGGCCGCGTAAACGTAGAATACGAGATGTGGACGAGGCTCCAAGCCGGACAGTGCTGACCAGAAGAAATTTGACCGTCACTTGTGGTCGGTGTGGGCGTGTTGGGCACAATTCTCGCACATGCGATAGTGGAGGTGAGTCAAGTGCCGGGGCTTGCAGAGGGCGCTGTAGAGGCAGGGGCGGCAGAGACAGGTTGGAAATATCTACGGCAAACCAGAAGTGTAGTAAGAATTTTTCAGGAGAGAAAATGGAAGCTGGAAGTATTCTTCACATGAATACAGGGAATGGAGCGACGAGCTATGCTCAGAACTCCACGGTTCAGAATCGGATCATATCGATGGCAAAACCAGTGACGTTGAAAGCCATTGAAGAACTGTTGGCCGGATCGTTGCCGGAGAGCATGGGGATAGCCGACTTAGGCTGCTCGTCGGGGCCAAACACTTTAAACGTAGTGTCGGAGATAATGGACGTCGTGTACGAAAAATACAGAGGCAATGGCCGGGCTTTGCCGGAGCTTAGCGTGTTTCTTAATGATCTTTATGAAAATGATTTCAACTGCGTGTTCGGCATGTTACCAACTTTCCGCCATCGGATTACGAAAGAGAAAGGCGATGAGTTTGCCGAGAAGTGCTCCATTTTCGCTGCTCCTGGTTCTTTTTATGGTAGACTGTTTCCCAGCAAGAGCCTCCATTTTGTTCACTCCTCTTCCAGCCTCCATTGGCTATCTCAGGCTCCGCCATGTTTGTGGAAAGAAGAAGGAAAGGAAGCGATGAACAAGGGGAAGATCTACATATCAAAGAAGAGTCCTCCATGCGTGCTAGAAGCTTACGCAGAGCAGTTTCGTGAGGATTTTTCTGCGTTTCTAAAGTCACGCTCAGAAGAAATGGTGACGGGTGGAGCAATGGTGCTGTCCTTTATCGGGAGAAAGTCTATGGACCCCACCTCTAATGAGAGTTATCTCCACTGGGAGTTCTTAGGGCAAGCCTTGATGAGCATGGTTTCCGAGGGACTGATTGAAGAAGAAAAAGTAGACTCTTTCAACGCTCCCTACTATGCTCCATACATAGAACAAATACGAATGGAGGTAAGCAAAGAAGGTTCATTCACCATGGATCGAGAGGAGTCTTTCGAAATTGAATGGGATGGAGGAAGTAACAAGGAAATCGTAGGCGATTTTGCAACTCAATCGAGTGGAAAACGGGTGGCGAAGACATTAAGAGCTGTGGTAGAATCCATGTTCGAGTCTCATTTTGGAAGAGAAATTATCGATGAATTATTCGTACGAGTGGAGAAAATTGTGGATGATCATCTTTCAAAGACAAGAGCCAAGTACATTAACTTGGTTATTTCTCTAGTCAGAAAATAA 1971 47.54 MLDRAAHDYLRGIVVTSWAKHAFGSHPKCDISLNNLSKSFNACILPARDKLILSMFEIIRKGIMGRIVKKNEKMAHSTDLLCPKISTRLAKLQLAGQNWSPKFSRAAQFKVSNGNEQYSVDLDRRTCTCYRWELTGIPCVHAVPCIHFMRRYPEEFVHAYYHRETYMAMYSHFLRLVNGLIKWPPVMNLDPIIPPPFKRLPGRPRKRRIRDVDEAPSRTVLTRRNLTVTCGRCGRVGHNSRTCDSGGESSAGACRGRCRGRGGRDRLEISTANQKCSKNFSGEKMEAGSILHMNTGNGATSYAQNSTVQNRIISMAKPVTLKAIEELLAGSLPESMGIADLGCSSGPNTLNVVSEIMDVVYEKYRGNGRALPELSVFLNDLYENDFNCVFGMLPTFRHRITKEKGDEFAEKCSIFAAPGSFYGRLFPSKSLHFVHSSSSLHWLSQAPPCLWKEEGKEAMNKGKIYISKKSPPCVLEAYAEQFREDFSAFLKSRSEEMVTGGAMVLSFIGRKSMDPTSNESYLHWEFLGQALMSMVSEGLIEEEKVDSFNAPYYAPYIEQIRMEVSKEGSFTMDREESFEIEWDGGSNKEIVGDFATQSSGKRVAKTLRAVVESMFESHFGREIIDELFVRVEKIVDDHLSKTRAKYINLVISLVRK 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55503233 55507927 - BLOR01575 Blo01g01575 56015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01575 656 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 289 654 IPR005299 GO:0008168
Blo01g01575 656 Gene3D - 290 642 IPR042086 -
Blo01g01575 656 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 285 656 IPR029063 -
Blo01g01575 656 SMART 26again6 125 152 IPR006564 GO:0008270
Blo01g01575 656 Pfam SAM dependent carboxyl methyltransferase 323 655 IPR005299 GO:0008168
Blo01g01575 656 Pfam SWIM zinc finger 111 143 IPR007527 GO:0008270
Blo01g01575 656 ProSiteProfiles Zinc finger SWIM-type profile. 118 150 IPR007527 GO:0008270
Blo01g01575 656 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 289 654 - -
Blo01g01575 656 Gene3D Vaccinia Virus protein VP39 305 581 IPR029063 -
Blo01g01575 656 ProSiteProfiles Zinc finger CCHC-type profile. 230 243 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01575 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - vvi:100260930 444.506
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01575 Blo12g00902 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01575 Blo-Chr1:55503233 Blo12g00902 Blo-Chr12:27226650 1.31E-177 dispersed
Blo12g00901 Blo-Chr12:27214861 Blo01g01575 Blo-Chr1:55503233 6.63E-119 dispersed
Blo13g00280 Blo-Chr13:14321707 Blo01g01575 Blo-Chr1:55503233 2.68E-56 transposed
Blo18g00602 Blo-Chr18:9441190 Blo01g01575 Blo-Chr1:55503233 1.16E-32 transposed
Blo03g00540 Blo-Chr3:20965778 Blo01g01575 Blo-Chr1:55503233 1.34E-52 transposed
Blo01g01575 Blo-Chr1:55503233 Blo04g00516 Blo-Chr4:4404930 2.17E-80 wgd
Blo01g01575 Blo-Chr1:55503233 Blo04g00907 Blo-Chr4:10646388 9.17E-79 wgd
Blo01g01575 Blo-Chr1:55503233 Blo05g00804 Blo-Chr5:29434105 3.20E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g980 Blo01g01575 Blo12g00902 . . . . . . . . Cma01g01923 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01693 Csa03g04233 . . . . . . . . . . . Cmo01g01986 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000335 3 0 67 7 2 1 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 2 3 0 0 1 9 0 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01575 Blo_Chr01 FPKM 206.064835 224.531357 66.39547 67.198936 74.478004 58.21999 72.219818 84.223656 90.729546 87.588097