Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01576 ATGAAGGAAAGGGTCGACCGCAAAATGGACAGATTGCTCCAAAATTTCTGTACGAAGGAAAGGGTCGACCGCACGGTCGACCGCGAAATGGACAGATTGCTCCAAAATTTCTGCACGAAGGAAAGGGTCGACCGCACCGAAGATCGCGGTGAAGTTCAGAAGGGCAGCGCTGAGATCTTTTTCCGTAAAGTGAAATTTTGGAAGGAGGACGGAGAGGGAGACGCGCCACCTGTATTTAATGTGGATGGTGTGAACTATTTTCATGTGAAGGTCGCTGGATTATTATTTGTTGCTACCACAAGAGTGAATTTGTCACCCTCTCTCGTTCTTGAACTTCTTCAAAGAATTGCACGAGTAATAAAGGATTACCTTGGAGTTCTAAATGAGGATTCACTCCGGAAAAATTTTGTTCTTGTGTATGAGTTACTGGATGAAATTATAGATTTTGGTTATGTGCAAACAACATCAACTGAGCTTTTAAAGTCATATGTTTTCAATGAGCCGATTGTGGTTGAATCTGGACGCTTGCCTACCCTTGGCCCTGCTTCCATTTTTGTGCAAGGGACCAAAAGGATGCCAGGCACAGCTGTTACCAAATCTGTTATAGCAAATGAGCCAGGGGGTAAAAGGAGAGAGGAAATTTTTGTGGACATTATTGAGAAAATAAGTGTGACGTTCAGCTCAAGTGGATATATCCTTACTTCTGAGATTGACGGCACCATTCAGATGAAAAGTTATCTTTCAGGCAACCCAGAAATACGGATTGCTCTGAATGAGGACCTGAGCATTGGAAGAAGTGGAAGATCTGTCAGTGATTATAACAGTTCATCTGGGTCAGGCCCTGTTATTCTTGACGACTGTAATTTCCATGAATCTGTGCATCTTGATAATTTTGATATTGACAGAACATTGTCCTTGATACCCCCAGATGGAGAATTTCCTGTTATGAATTATAGAATGACTCAGGAATTCAAGCCTCCCTTTCGTATTAATGCATTGATTGAAGAAGCTGGACCCCTTAAGGCGGAAGTAATTCTAAAAATACATGCTGAATACCCCTCTTCTGTGACAGCAAATTCCATACTGGTACAAATGCCACTGCCAACATTCACTTCCAGAGTCAGTTTCGAGTTGGAACCTGGAGCAGTTGGAAATACAACTGATTTTATAGACGCAAACAAGAGACTTGAATGGGGGTTAAAGATTGTTGGTGGAGCAGAACATACTCTGCGTGCAAGGCTTACCTTCTCTCAAGAGTCACATGGAAATATTGTGAAGGAAGCTGGACCTGTTAGCATGACATTCACAATTCCGATGTATAATGCTTCTAGACTGGTGGTAAAGTACTTGCAGATAGCAAAGAAGTCCAGTAGCTACAATCCGTATAGATGGTCATTGTCCATGAAACTGATTCGCCGGGTTAAAAAAGGTTTATCGGTCATCTCCCACTCGCTTGTCGCTTCTCCCCCCTTATCTGCTTATTCTCGAGGTGATATGATTTCTTTGCAAGGACCAGTTATTTGTCCCAGCTCCAGTCTCGGAGCTAAGCAAACTGGACTTCGCATTCTGCCAGTAAATTGCCCTTTAATGGTGGTTAGGCTTCGAAGAAGTGAATTCTGGGGTGTCAAGGGGATAAATGGAACCAACTTTAACGCTGGGGCTAGTTCTCATCAGCTCAACGTGCGGAAATGCCAGACAGTACATTGCAGTTTCAATTCATCATCTGATGGCAACGGAAGTACTGCAGAAAACTTCAACGAAAAAAATGAAGAATATGTCAACTCTAGCATAATCGAGGCTGTTGAGGTGAAGAGTGGGGCAGATGGTTTCATGATCAAAATGCGGGATGGTAGACATTTACGATGTGTCCATAACAACCCTCAGGGAGGACATCTTCCAGATTATGCTCCTCATCCTGCAATTGTTTTGAAGATGGAAGATGGGACTGGTCTTCTTCTCCCCATAATTGTTTTGGAGATGCCGAGTGTGTTGCTCATGGCAGCGGTGCGCAATGTTCAAATTGCAAGACCTACTATGTATCAAGTGGTTAAGGATATGATTGACCAGATGGGATATGAGGTCAAACTTGTTAGAGTTACTAAGAGAGTGCATGATGCATACTTCGCTCAGCTCTACCTCACAAAGATAGGTAGTGATACTGAGTGTGTGAGCTTTGATCTTCGACCTTCAGATGCCATCAACATTGCTGTGAGGTGCAAGGCTCCCATACAAGTGAACAAATACTTGGCATACAGTGATGGGATGAGGGTTATTGAATCTGGAAAGCTGTTAGCACATACCTCGGCTGGTGATGGCTTATTATTCACTGAACTGGATAGGCCAAGTGGTCAACCATGTGTGGAAACCAAGGAGTTTAATCTTGTGCGAAACATGCTGATAGCTGCAGTTGAAGAGCGCTACAGAGATGCTGCCCAATGGAGGGACAAACTTAATGTTCTTCGGGCTAGGAAGAACTTGGCATGA 2484 43.52 MKERVDRKMDRLLQNFCTKERVDRTVDREMDRLLQNFCTKERVDRTEDRGEVQKGSAEIFFRKVKFWKEDGEGDAPPVFNVDGVNYFHVKVAGLLFVATTRVNLSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEIIDFGYVQTTSTELLKSYVFNEPIVVESGRLPTLGPASIFVQGTKRMPGTAVTKSVIANEPGGKRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRIALNEDLSIGRSGRSVSDYNSSSGSGPVILDDCNFHESVHLDNFDIDRTLSLIPPDGEFPVMNYRMTQEFKPPFRINALIEEAGPLKAEVILKIHAEYPSSVTANSILVQMPLPTFTSRVSFELEPGAVGNTTDFIDANKRLEWGLKIVGGAEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLVVKYLQIAKKSSSYNPYRWSLSMKLIRRVKKGLSVISHSLVASPPLSAYSRGDMISLQGPVICPSSSLGAKQTGLRILPVNCPLMVVRLRRSEFWGVKGINGTNFNAGASSHQLNVRKCQTVHCSFNSSSDGNGSTAENFNEKNEEYVNSSIIEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTMYQVVKDMIDQMGYEVKLVRVTKRVHDAYFAQLYLTKIGSDTECVSFDLRPSDAINIAVRCKAPIQVNKYLAYSDGMRVIESGKLLAHTSAGDGLLFTELDRPSGQPCVETKEFNLVRNMLIAAVEERYRDAAQWRDKLNVLRARKNLA 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55552504 55565409 - BLOR01576 Blo01g01576 56016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01576 827 ProSiteProfiles Bifunctional nuclease (BFN) domain profile. 622 757 IPR003729 GO:0004518
Blo01g01576 827 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 210 464 IPR036168 -
Blo01g01576 827 SUPERFAMILY SNARE-like 50 169 IPR011012 -
Blo01g01576 827 Gene3D - 40 169 - -
Blo01g01576 827 PRINTS Clathrin coat assembly protein signature 353 368 IPR001392 GO:0006886|GO:0016192|GO:0030131
Blo01g01576 827 PRINTS Clathrin coat assembly protein signature 284 311 IPR001392 GO:0006886|GO:0016192|GO:0030131
Blo01g01576 827 PRINTS Clathrin coat assembly protein signature 129 156 IPR001392 GO:0006886|GO:0016192|GO:0030131
Blo01g01576 827 CDD AP-4_Mu4_Cterm 206 464 - -
Blo01g01576 827 ProSiteProfiles Mu homology domain (MHD) profile. 211 477 IPR028565 -
Blo01g01576 827 CDD AP4_Mu_N 49 171 - -
Blo01g01576 827 Pfam Adaptor complexes medium subunit family 210 464 IPR028565 -
Blo01g01576 827 Gene3D Mu homology domain, subdomain B 326 436 - -
Blo01g01576 827 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 304 318 IPR018240 GO:0006886|GO:0016192|GO:0030131
Blo01g01576 827 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 47 465 - -
Blo01g01576 827 Pfam Bifunctional nuclease domain 641 751 IPR003729 GO:0004518
Blo01g01576 827 Gene3D Mu homology domain, subdomain B 210 464 - -
Blo01g01576 827 SUPERFAMILY Hypothetical protein TM0160 622 760 IPR036104 GO:0004518
Blo01g01576 827 Pfam Clathrin adaptor complex small chain 28 158 IPR022775 -
Blo01g01576 827 PANTHER AP COMPLEX SUBUNIT MU 47 465 - -
Blo01g01576 827 Gene3D Bifunctional nuclease domain 628 762 IPR036104 GO:0004518
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01576 K12402 AP4M1; AP-4 complex subunit mu-1 - vvi:100254067 741.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01576 Blo-Chr1:55552504 Blo17g00773 Blo-Chr17:24644966 1.87E-136 dispersed
Blo04g00870 Blo-Chr4:9628567 Blo01g01576 Blo-Chr1:55552504 1.96E-27 transposed
Blo01g01576 Blo-Chr1:55552504 Blo12g00899 Blo-Chr12:27179806 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g989 Blo01g01576 . Bda01g00517 . Bpe02g00374 . . Bma01g02338 . . Cma01g01929 Cma09g00139 Car01g01506 . . Cpe06g00097 . . . . . . . . . . . . . . . . . . Cone20ag0125 Lsi04g01696 Csa03g04237 Chy04g00478 . . . . . . . . . . Cmo01g01992 Cmo09g00135 . . . Car09g00124 . Cpe02g00108 . . . . . . . Cla05g01915 Cam05g2052 Cec05g2063 Cco05g2116 . Cmu05g1923 Cre05g2046 . . . Cme04g00530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004347 2 1 2 2 2 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 2 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01576 Blo_Chr01 FPKM 4.185211 5.193345 3.733595 3.977958 4.632135 4.426116 4.856058 4.727582 3.630667 3.687101