Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01578 GCCTTGAGTAAGATTGCGTGCAATAGGCTCCAGAAAGAGCTTGTAGAGTGGCAGATCAATCCTCCTGCTGGATTTAAGCACAAAGTTACTGATAATCTCCAAAGGTGGGTTGTTGAAGTCAACGGAGCGCCGGGGACTTTGTATGCCAACGAAATCTATCAGCTCCAAGTCGATTTTCCCGAGCATTATCCAATGGAAGCCCCTCAGGTGATTTTTCTTCCACCGGCCCCTCTGCATCCACATATTTACAGCAATGGACATATTTGTTTAGACATTTTATATGATTCATGGTCTCCAGCCATGACTGTGAGTTCCATCTGCATCAGCATTCTCTCCATGTTATCCAGCTCAACTGTAAAGCAACGACCGGCCGATAATGATCGTTACGTGAAGAACTGCAGGAACGGCCGATCACCCAAGGAGACGAGATGGTGGTTCCACGACGACAAGGTCTAA 456 47.15 ALSKIACNRLQKELVEWQINPPAGFKHKVTDNLQRWVVEVNGAPGTLYANEIYQLQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDKV 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55586351 55587667 + BLOR01578 Blo01g01578 56018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01578 151 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 5 151 - -
Blo01g01578 151 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Blo01g01578 151 Gene3D Ubiquitin Conjugating Enzyme 3 151 IPR016135 -
Blo01g01578 151 SUPERFAMILY UBC-like 3 119 IPR016135 -
Blo01g01578 151 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Blo01g01578 151 SMART ubc_7 8 151 - -
Blo01g01578 151 CDD UBCc 7 107 IPR000608 -
Blo01g01578 151 Pfam Ubiquitin-conjugating enzyme 9 144 IPR000608 -
Blo01g01578 151 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16-RELATED 5 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01578 K10688 UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W [EC:2.3.2.25] - pvy:116127481 308.145
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01578 Blo-Chr1:55586351 Blo06g00146 Blo-Chr6:5745917 1.23E-71 dispersed
Blo01g01578 Blo-Chr1:55586351 Blo16g00061 Blo-Chr16:1956089 1.60E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1009 Blo01g01578 . Bda01g00514 . Bpe02g00371 . . Bma01g02341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003259 4 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 4 1 1 1 1 4 1 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01578 Blo_Chr01 FPKM 21.719606 23.992504 24.854742 24.454243 28.925344 28.671387 27.394894 30.426584 31.273993 36.959667