Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01579 ATGAAACGTGGCTGTTTGGTTGCACGAGTCTGCTACTTGGCAAGACAAGTCGGTCATCTCGTGGCGATGGGTGCGGTCTGTGGGCAGCCCTGTGGACTACACATGGCGTCAGGTTTGTTGGGTGACGCGCTAAGATGGCTAGCTTGGTTCGACTTTTCCTTCCTAGCAAGGCAAGTCATGGATTTGGATATCGGGAATAAGATCGTTGTGGATTTTACTGCATCATGGTGCGGACCATGCCGGGCAATTGCTCCAGTTCTATCCGAGTTAGCCAAGAGAATAACGAATGTCCTGTTCCTGAAAGTGGATGTGGATGAATTAAAGGACGTCGCTGAAGAGTGGGGTGTAGAGGCGATGCCAACCTTCATATTCCTGAAAGATGGAAAACAGAGTGCCCATGGATCCGAGAAAAGCCATGTCTCTGTTGGACCATACGGAGGGCGCAGCGGTGTGCCCTGGGACGATGGCATTTACGGCGGTGTGAAGAAAATAACAATCACTCACGGTGCTCTGATTGATTCTATCCAGATCGAGTACGACACCGGCGGGAAATCAGTCTTGTCGGAGAGGCATGGCAGTTATGGTTACAAGACAGATAAGATCCATTTTGATCTTCCAAACGAATGCATTACATGTGTGACGGGTCATTATGGAAATCTCGACGAATATGGTCCTGTATATGTTCGATCTATTGCGTTCGAAAGCAACAAGAGGAGATATGGACCTTTTGGAATCCCTCTTGAAATCCCTTTCTCAATTCCATTAACTGGGAGTTCAGTTGTGGGGTTCCACGGGAGAAGTAGTTTTCATCTTGATTCCATTGGAGAACCCCTAAAGATGAAGCCCGTTGCATCATTAGGACCCTGGGGTGGTGTTGGTGGGACACCCTTCGATGATGGACCCCACTCGGCCGTCTACATAATTCACCTCGCTCGTTCCTCTGTGGGTGTAGTTTCTATCCAGGCATGTTACGACAGAAATGGCCGGATCGTTTGGGGAAACACTAATGGAGGAATTGGAGGAAATAGATTGGACAAGATAACATTTGATCATCCGCACGAACACCTGACTCGTATAAGTGGGTTCTATGGACCGAGCACTTTCGGAGGACCGACTGTTGTGAAATCCATCACATTTTACACCAACGGGACCAAGTATGGTCCCTTTGGAGAAGAGAAGGGAACGCACTTCTCGTCTGATTTGAAAGAGGGGGGCTCTATAACTGGTTTTCACGGAACTAAAGGCAATCTCTTGGAATCTATTGGCGTTTATGTTGTGTAA 1281 48.09 MKRGCLVARVCYLARQVGHLVAMGAVCGQPCGLHMASGLLGDALRWLAWFDFSFLARQVMDLDIGNKIVVDFTASWCGPCRAIAPVLSELAKRITNVLFLKVDVDELKDVAEEWGVEAMPTFIFLKDGKQSAHGSEKSHVSVGPYGGRSGVPWDDGIYGGVKKITITHGALIDSIQIEYDTGGKSVLSERHGSYGYKTDKIHFDLPNECITCVTGHYGNLDEYGPVYVRSIAFESNKRRYGPFGIPLEIPFSIPLTGSSVVGFHGRSSFHLDSIGEPLKMKPVASLGPWGGVGGTPFDDGPHSAVYIIHLARSSVGVVSIQACYDRNGRIVWGNTNGGIGGNRLDKITFDHPHEHLTRISGFYGPSTFGGPTVVKSITFYTNGTKYGPFGEEKGTHFSSDLKEGGSITGFHGTKGNLLESIGVYVV 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55587913 55596115 - BLOR01579 Blo01g01579 56019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01579 426 CDD Jacalin 294 425 IPR033734 GO:0030246
Blo01g01579 426 PRINTS Thioredoxin family signature 76 85 - -
Blo01g01579 426 PRINTS Thioredoxin family signature 115 126 - -
Blo01g01579 426 PRINTS Thioredoxin family signature 68 76 - -
Blo01g01579 426 SUPERFAMILY Mannose-binding lectins 281 425 IPR036404 -
Blo01g01579 426 SUPERFAMILY Mannose-binding lectins 140 275 IPR036404 -
Blo01g01579 426 CDD Jacalin 150 275 IPR033734 GO:0030246
Blo01g01579 426 ProSitePatterns Thioredoxin family active site. 69 87 IPR017937 -
Blo01g01579 426 CDD TRX_family 68 130 - -
Blo01g01579 426 Gene3D - 277 425 IPR036404 -
Blo01g01579 426 ProSiteProfiles Thioredoxin domain profile. 35 166 IPR013766 -
Blo01g01579 426 SUPERFAMILY Thioredoxin-like 65 131 IPR036249 -
Blo01g01579 426 Gene3D - 140 276 IPR036404 -
Blo01g01579 426 Pfam Jacalin-like lectin domain 150 275 IPR001229 -
Blo01g01579 426 Pfam Jacalin-like lectin domain 294 425 IPR001229 -
Blo01g01579 426 Gene3D Glutaredoxin 55 139 - -
Blo01g01579 426 PANTHER JACALIN-RELATED LECTIN 3 285 425 - -
Blo01g01579 426 PANTHER JACALIN-RELATED LECTIN 3 132 278 - -
Blo01g01579 426 PANTHER - 285 425 - -
Blo01g01579 426 PANTHER - 132 278 - -
Blo01g01579 426 Pfam Thioredoxin 66 133 IPR013766 -
Blo01g01579 426 ProSiteProfiles Jacalin-type lectin domain profile. 139 280 IPR001229 -
Blo01g01579 426 SMART Jacalin_2 150 277 IPR001229 -
Blo01g01579 426 SMART Jacalin_2 294 425 IPR001229 -
Blo01g01579 426 ProSiteProfiles Jacalin-type lectin domain profile. 283 426 IPR001229 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01579 - - - pop:18099679 319.701
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01579 Blo-Chr1:55587913 Blo06g00720 Blo-Chr6:30336839 2.07E-27 dispersed
Blo18g00501 Blo-Chr18:6282322 Blo01g01579 Blo-Chr1:55587913 1.44E-12 dispersed
Blo01g01579 Blo-Chr1:55587913 Blo17g00782 Blo-Chr17:25001885 3.37E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01579 Blo_Chr01 FPKM 5.701542 7.182538 0.390114 0.323703 5.239443 5.630321 7.606622 0.061269 0.0 0.0