Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01582 ATGGCGAGGGGGAAGATTCAGATCAAGAGGATAGAGAATCCGACCAACAGGCAGGTCACCTACTCTAAAAGACGAAAAGGATTGTTCAAGAAGGCGGAGGAGCTCTCTGTTCTCTGCGATGCTCAGGTTTCCATTATTATGTTTTCTAGCACCGGCAAACTCCATGAATATTTCAGCTCCACCACCACGACGAAGGAGTTACTCGATCGTTACCAGAGGGCATTAAATGTTGATATTTGGAACTCGCATTATGAGAGAATGCAAGAGAGTCTGAAGAAGCTGAAAGAAGTCAACTGGAATCTCCGAACGCAGATAAGGCAAAGGGTCGGCGAGTGTCTCGACGATCTGAACTTTGAAGAACTGCTTCGTCTTGAACAAGATATGGAAGATGGTGTCAAGTCTATTCGGGAGCGCAAGTACAAGGTGCTGGACACTGAGTATAATAAACACAAGAAAAAGGTGATCTGCTCTTCCGTTTGCAGATTAAAAATGGCAGCTTTCTTCAATAACGAGGAAGATGTACACAGAAGAATTCTCCAGGAATTTGACGTGGCAATGGAGGAAGATCCACAGTATGGAGGAGTTGAGGTCGACGACGGAGGAGGAGGAGGTTACGGCTCCATTGTTGGATTCTCAAACGGAGGTCCGCACGTATTTGCACTCCGACTGCAACACAACCAGCCTCATCTCGCCGGAGCCGGACCGGATCTCAGAACGTATCCCTTGCTTGAGTAG 735 47.35 MARGKIQIKRIENPTNRQVTYSKRRKGLFKKAEELSVLCDAQVSIIMFSSTGKLHEYFSSTTTTKELLDRYQRALNVDIWNSHYERMQESLKKLKEVNWNLRTQIRQRVGECLDDLNFEELLRLEQDMEDGVKSIRERKYKVLDTEYNKHKKKVICSSVCRLKMAAFFNNEEDVHRRILQEFDVAMEEDPQYGGVEVDDGGGGGYGSIVGFSNGGPHVFALRLQHNQPHLAGAGPDLRTYPLLE 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55640009 55641521 + BLOR01582 Blo01g01582 56022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01582 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo01g01582 244 Pfam K-box region 82 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g01582 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 241 - -
Blo01g01582 244 Coils Coil 84 104 - -
Blo01g01582 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Blo01g01582 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo01g01582 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo01g01582 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo01g01582 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo01g01582 244 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Blo01g01582 244 ProSiteProfiles K-box domain profile. 84 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g01582 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo01g01582 244 PANTHER APETALA3 1 241 - -
Blo01g01582 244 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Blo01g01582 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01582 Blo-Chr1:55640009 Blo04g01130 Blo-Chr4:18394377 4.98E-31 dispersed
Blo01g01307 Blo-Chr1:50189791 Blo01g01582 Blo-Chr1:55640009 7.28E-43 transposed
Blo01g01582 Blo-Chr1:55640009 Blo05g00818 Blo-Chr5:29833204 1.23E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11938 PF01486 K-box 4.10E-17 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01582 K09264 - csin:114263054 273.863