Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01583 ATGGGCGCTCTTGCCCCAGTTGGGCCTTGGATTCCCGAAGACGATATTTTGTTGAAGAACGCTGTTGAGGCTGGGGCTTCCTTGGAATCACTTGCTAAAGGTGCTGTGCAGTTTTCTCGAAGATTTTCTGCTAAAGAAATACAAGATCGGTGGCATTCTCTTCTTTACGATCCTGTTATTTCCTCAGATGCCTGTAGTCGTATGATTGATTTTGAACGATCAGCAGTGAATGTTCCTTTAAGGTTTGACAGAGGTGGAATTTTAAAAGACAACAAATCTGTCTCTGGTAAGAGGAAATCGAAAAGTGTTCGCAGTTGTTATTATGCTTTGCGTAAAAGGATTTGCCATCAGCCATTCGATTCTATGGATCTTGGTTTTCTTGTTGGGCCAGGTTATGGCAATTGTGCTGAAAACAACGACTCATTTTCTGGAAATGGCATCCTCTCAGAACCTATATTGAGTAATCAGGGAACAGATGTAGGCATTTTCCAAAATGATATTCTCCAAGATGTCATGGATGGTAACACTGATGACCATATCTTTCATGCCAGATTTCAGCAATCAATTGATGGGGGTTTTCCAATGGAGCAGAATAACATGCGCAATGGAATTCCTGATTCTATTATGGAGAATCAGGCTCTCTCTGGAGATGTTTCTAGAGTTGATGAGTTGAGTGAGGCAGAAAACTTTTCAATGCATGCCCTTGCTGAAAATTATTTGGCAGAATTGTCCAATTCACTTTTGAATTTAACAAATGAGGAGGATGAACTTCTCATCATGGATGTCGATGGACAAGGTGAGATTGAGAAATCTTATTATGATGGCTTGAGCTCACTTTTGGTGAATTCACCAAATAATGTTAATCAAGAGCAGAAGGCTAATCCAAGTAACGCTGAAGCATCCTGTGCCTCAGATGCACATCTTATGGATGATTCTGGTTCATGTACTAGAGAACCGAATGCAAAGGGGCCTAACTGTGTCGATGAATTGGTTTGCAGTTCTGAAGTGATACTGCCATCATTTGCATTAGATGCTGAACATCATATTTCTGAAGGACCTATGTTCTGCACATTAAACACAGAGGATCCAGAAATTCCAGATAATGATGATATTTCTTTGCCAAATCAATTTCAACCATTAGCAAGTGCCTCTGCTGCGAATCCATCACAGGAATCCTTTGATCCATTTTTTTTGACTGTCAAGGATTTATCTGGTAACAAAGAAGCTACTGATTTACTTCCGAATCTGATACTTAGGAATGAGAAATATTCTGGAAAGTCTAGTTTAACTTCTCAGCCAGTGGGACTAAATATTCTACCCGAAACAGGTCAAACCCATTTAATTTGTGATTCTACTGGCAAATTTGAATTGCCTCATCGTGATTCAACTTGTGTGACATCTAGAAATGCAAATATTGTTAGTAATCCAAGGTATGGTGGATCAACAATTGCAAGTGCCTGTGCTGTCCTGTCTGTAGTGACGCAAGGAGGAACCATTACCAATTCTAACCAAGAGAAGTCAGCGCCTGATTCTGAAAGCTACAGAAACTATGCTCCAACTAATACTTGTGTCATTAAACATGAACCAGATGTAATTGGCACAACTGAAGATCCTAAGCTAATAAATTCAGAAGTAGTAACTGTTGGTATTGCTGATATAGGACAAGGAGTCCATTCTCCTAATCAGGAGGGGTTGCACATTGATAGTGATGATGACGTACCTAATTTTTCAGATATTGAGGCAATGATACTTGACATGGACTTAGCTCCTGATGACCAGGATTTGTATTCTTGTGAGGAAGTAACAAGATATCTGCATGAAGGCACTAAGAAGACAATTATGAGGCTTGAGCAGGGTGCTCATTCTTATATGCAAAGAGCCATTGCATCTCACGGTGCATTTTCCATTTTGTATGGTAGACGATCAAAGCATTATATCAAGAAACCAGAGGTTTTACTTGGTAGAGCAACCGATGATGTTGTTGTGGATATTGACCTTGGAAAGGAGGGGCGTGCTAACAAAATATCTCGACGGCAGGCAATTATTAAAATGGACGAAGATGGATCCTTCTTTCTACAAAATCTTGGTAAATGTCCAATCTCTGTAAATAACAAAGAAGTCTATCCAGGGCAAAGTTTAATCCTGAGTTCAAGTTGCTTGATTGAGACGAAGCTGATGAAGATCCAGTGCGATGTCTGCCAAAAAGAGGAGGCCTTACTTTTCTGCACCGCCGACGAGGCCGCCCTCTGCGACGCCTGCGACCACGTCGTCCACCACGCCAATAAACTCGTTTCCAAACACCAACGCTTCTCTCTTCTCCACTCTTCTTCTGACCTGCTACCCGTCTGCGATGTCTGTCAGGAAAGAAGGGCTTTCTTGTTTTGTCGACAGGACAGAGCGATTTTATGCAGAGAGTGTGATTTTCCCCTTCACATGGCCAACGAGCATATGCAGAAACACTCTAGATTTCTTCTATCTGATGTTAAGCTTTCTGCAACTTCCTCCTTCTACTCCTCGTTTCCTTTGTCTAACTCCTCTGCAACCATTAATGATACCGACTCAATGCAAAAGACTCTCTCTCCTCCTCCTCCGTCAACCATGCAAAACATGGCCATGGCGTATGATAATTGGGAATACTTGACAGAGACAGTTCCTGGTTGGCAATTCGAAGACCTCTATCCGGTTTCTTCTTCTCCTCCTTACGTCTGTAGCGGTAATGGCGATAGTGTATTACCTTATCTGGATAATGAGAGTGGAAATACGGGATTATGGGTTCCTCAGAAGCCATCTCCTGTGCAGACGAGTGGAGAAACTGGTTTGAAGGAGACAAAGGTAGCGACAGAAGCAAGCAATAGAGGTAGAAAAGGAGGGTGGAAGCTCCTTTCTTCTTCTCCGACGCCGTTTTAA 2907 41.93 MGALAPVGPWIPEDDILLKNAVEAGASLESLAKGAVQFSRRFSAKEIQDRWHSLLYDPVISSDACSRMIDFERSAVNVPLRFDRGGILKDNKSVSGKRKSKSVRSCYYALRKRICHQPFDSMDLGFLVGPGYGNCAENNDSFSGNGILSEPILSNQGTDVGIFQNDILQDVMDGNTDDHIFHARFQQSIDGGFPMEQNNMRNGIPDSIMENQALSGDVSRVDELSEAENFSMHALAENYLAELSNSLLNLTNEEDELLIMDVDGQGEIEKSYYDGLSSLLVNSPNNVNQEQKANPSNAEASCASDAHLMDDSGSCTREPNAKGPNCVDELVCSSEVILPSFALDAEHHISEGPMFCTLNTEDPEIPDNDDISLPNQFQPLASASAANPSQESFDPFFLTVKDLSGNKEATDLLPNLILRNEKYSGKSSLTSQPVGLNILPETGQTHLICDSTGKFELPHRDSTCVTSRNANIVSNPRYGGSTIASACAVLSVVTQGGTITNSNQEKSAPDSESYRNYAPTNTCVIKHEPDVIGTTEDPKLINSEVVTVGIADIGQGVHSPNQEGLHIDSDDDVPNFSDIEAMILDMDLAPDDQDLYSCEEVTRYLHEGTKKTIMRLEQGAHSYMQRAIASHGAFSILYGRRSKHYIKKPEVLLGRATDDVVVDIDLGKEGRANKISRRQAIIKMDEDGSFFLQNLGKCPISVNNKEVYPGQSLILSSSCLIETKLMKIQCDVCQKEEALLFCTADEAALCDACDHVVHHANKLVSKHQRFSLLHSSSDLLPVCDVCQERRAFLFCRQDRAILCRECDFPLHMANEHMQKHSRFLLSDVKLSATSSFYSSFPLSNSSATINDTDSMQKTLSPPPPSTMQNMAMAYDNWEYLTETVPGWQFEDLYPVSSSPPYVCSGNGDSVLPYLDNESGNTGLWVPQKPSPVQTSGETGLKETKVATEASNRGRKGGWKLLSSSPTPF 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55642228 55651633 + BLOR01583 Blo01g01583 56023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01583 968 SMART FHA_2 650 707 IPR000253 GO:0005515
Blo01g01583 968 PANTHER FHA DOMAIN PROTEIN 232 728 - -
Blo01g01583 968 PANTHER FHA DOMAIN PROTEIN 1 226 - -
Blo01g01583 968 Gene3D - 608 728 - -
Blo01g01583 968 ProSiteProfiles Zinc finger B-box type profile. 782 825 IPR000315 GO:0008270
Blo01g01583 968 CDD Bbox1_BBX-like 730 770 - -
Blo01g01583 968 SMART bboxneu5 725 772 IPR000315 GO:0008270
Blo01g01583 968 SMART bboxneu5 778 825 IPR000315 GO:0008270
Blo01g01583 968 PANTHER MICROSPHERULE PROTEIN 1 1 226 IPR037912 GO:0002151|GO:0031011|GO:0071339
Blo01g01583 968 MobiDBLite consensus disorder prediction 927 968 - -
Blo01g01583 968 CDD Bbox1_BBX-like 782 825 - -
Blo01g01583 968 Gene3D Classic Zinc Finger 729 823 - -
Blo01g01583 968 Coils Coil 236 256 - -
Blo01g01583 968 ProSiteProfiles Forkhead-associated (FHA) domain profile. 651 707 IPR000253 GO:0005515
Blo01g01583 968 PANTHER MICROSPHERULE PROTEIN 1 232 728 IPR037912 GO:0002151|GO:0031011|GO:0071339
Blo01g01583 968 ProSiteProfiles Zinc finger B-box type profile. 725 772 IPR000315 GO:0008270
Blo01g01583 968 MobiDBLite consensus disorder prediction 927 945 - -
Blo01g01583 968 Pfam B-box zinc finger 728 769 IPR000315 GO:0008270
Blo01g01583 968 CDD FHA 639 722 IPR000253 GO:0005515
Blo01g01583 968 Pfam N-terminal region of micro-spherule protein 10 76 IPR025999 -
Blo01g01583 968 SUPERFAMILY SMAD/FHA domain 641 722 IPR008984 GO:0005515
Blo01g01583 968 Pfam FHA domain 652 722 IPR000253 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01583 - - - hbr:110666015 558.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01583 Blo18g00789 CCT
Blo01g01583 Blo18g00789 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01583 Blo-Chr1:55642228 Blo07g00980 Blo-Chr7:29282753 2.97E-07 dispersed
Blo13g00595 Blo-Chr13:28371730 Blo01g01583 Blo-Chr1:55642228 6.09E-72 transposed
Blo01g01583 Blo-Chr1:55642228 Blo16g00074 Blo-Chr16:2107024 6.15E-18 wgd
Blo01g01583 Blo-Chr1:55642228 Blo18g00789 Blo-Chr18:22814417 2.48E-61 wgd
Blo01g01583 Blo-Chr1:55642228 Blo04g00532 Blo-Chr4:4583064 9.91E-55 wgd
Blo01g01583 Blo-Chr1:55642228 Blo04g00894 Blo-Chr4:10317171 8.33E-12 wgd
Blo01g01583 Blo-Chr1:55642228 Blo05g00819 Blo-Chr5:29853749 5.68E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11939 PF00498 FHA 5.30E-06 CL0357 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01583 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0