Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01588 ATGTCTGCCGTGGAAGTGGAGAACAAGGTCGAGGATGGAAAAGAGAAGAAATCAGAAAAGGGTGGAGAAGTCTTGTTTTGTGGCGGAACGGATTGGGATGCAATTGGTCGGCGGAAAGGCCCCGATGGAAATTTAATCTCACCCACTCGGCTTCGTCCACTAATCAATGTTAACATTCGATTTATAGCCTCTGGCTGCTCATCTTGCCATTGTGTGGCGTTGGACGTGGAAGGACGTTGCTATACATGGGGACGTAATGAGGCATCCTCCGTTTTTCAGAAAGGGCAGTTGGGTCATGGAGATAAGCTTCAGCGTGATCGGCCAACCGTAGTGTCTGCACTGGCGAAGTACAAAATTGTTAAAGCTGGAGCAGGTAGGAGTCATACTGTTGTAATCACTGACGAAGGCCATTCCCTATCCTTTGGCTGGAATAAACACGGGCAGTTAGGATCAGAGATTGAACTATATCCTGTTCGGTGTCTTGTATCTGAAGTGACAACTACTGCTTGTGGTGGTGATTTCACTGTGTGGCTATCTGCTGTTGAAGGCGCTTCTATACTGACTGCAGGACTACCTCAATATGGACAACTTGGACATGGAACAGATAATGAGTACAATACTAAAGACAGCTCAGTGAGGCTTGCGTATGAAGCCCAACCACGTCCTAAAGCAATAGCTTCTCTGTCTGGAGAAGTCATTGTCAAAGTTGCATGTGGAACTAACCATACAGTTGCTGTGGATGCAAATGGCTTTGTCTACACGTGGGGATTTGGCGGATATGGAAGACTTGGACATAGAGAGCAGAAGGATGAGTGGGTCCCTCGCCGTGTTGATGTTTTTCAGAGGCAGAACATGCTACCCCCTAATGCTGTTGTTTCAGCTGGTTCTGCTAACTCTGCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGGAAAGTAAAGAATACTGGTGATGACTGGATGTATCCCAAACCTCTCTTGGATTTAAGTGGATGGAATCTACGTTGCATGGATTCAGGCAATATGCACTTTTTCGTTGGGGCTGATAGCTCCTGCATTAGTTGGGGTCATGCTCAGTATGGAGAGCTAGGATATGGCCCTACTGGTCAGAAGTCTTCTGCAGTGCCCAAAAAGGTTGAAATTTTAGAGGGAATGCATGTTATCAGTGTTGCATGTGGCATGGGTCACTCCATGGTTATTGTTGATCGAACAGATGGTGCTGATCAACTTGATAAGCTTGATATTTATGATGGTGTAGCTTCTGCTGCTGCAGAGACTGAGACACAGCAAAACAAAGCTTTGGCGGTGAAGCAAAGTGCAAAAAAGAATGCTAAAACCTCTGATAAATCAAGGAAGAAAAGAAAATCAAAAGATTTGTCAGACTCCGAAGAGGAAGAGGAAGAGGAAGATGAGGAGGAAGATGATGCTGATTTGGAAATTAACAGCAGTGGGGAAGAGGAGAATGGGGAGGTAGAAATAAAAAGACGAAGGGGCAAAAAGGGGTCTGGAGGTCGAGGAAGAGGGAGTAATAAATCAGTATCGGAGGGGAAAGGCAGTGGAGGCGGCCGAGGGCGTCCAGCAAAAACAACACAAATGGACCGTAAAAGTTTGATGAACTGTTTTGGCACACACCAGGAGGGATCTTCCACAAGAGTGGCCATTCCGAGGTGCTGTGTTCGAATAAGAATCGAGAATGAAGATCTGAGCGAAAGACACACTTGTACTAACACTAACAAGGCTACGGACGAGAAACGGGGATGGAGTTTTCGAAAAAGATCGGCAACTCAACGAGTGCTAAGCAATTCTGTCATCACAGAAACCCCTCCTTCTGAATTTAAAGACAGTTTCGCAACGGCTGGTCTCGACTTTGAGCAGACAGCAAACTCGATAGTTCCAGAAAAAAAATTTGTTACAGATTGCGTAAATGAAAAACCTCAGCTGTCTTGTCCTGAAAATGCAAAACCATTTGAAGTTGTGGATTCTACCCACGATGAAAACAGGGATGATGATCAGATGGAGGAATCTATCGCCATTGTCATTCAGACATCCATTAGGGGGCTTCTGGCTCAAATGGCTCTTACGAAACTTAAGAAATTGGTCAAATTACAAGCTGCTGTTCGTGGGCATGTAGTTCGAAGGCATGCTGTGGGAACATTGCGATGCATTCAAGCCATAGTCAAAATGCAAGCTCTTGTTCGTGCTCGTTCTTCTCATCAATCTCTGGGAGGGTCAAATGGAGACAAATCGGATCGGAAAAATGAACACGATTTGAATAGATTTGAGACCCGGGAGAATAAAGAGTTCGATAAGTCTAAGGTGATGTACATTTCTATCGAGAAGCTGCTGAGCAATAGGTTAGCTCAACAGTTGCTAGATTCTACACCGAAGAACACATCTATCAAGATTAAGTGCGATCCTTCAAAGTCCGATTCTGCATGGAAATGGTTGGAGAGATGGATGTCTGTTTCATCAGTGGATATTGTTGAGCAAAATGATGCAGAGTTGATTGAGGAAAAGGCCGGAAATGAAAAGGAGGAAAATTTTGTCTCTCAACTCGATCATGGAATTGACTCTGAAGTTTGCAAATCGGATAATGCAATTTTCATCGACAAGCAGTCGACTTTGCCACCAGAAGGTGAAGCTGAGTTAATCACTTGTGAGGATGAAAGTTCAGAAGTTGAGGCATGTGAGGCTACCTCTTCTTCACCGAGAGAGACGGAAGAGATGGAAGATATGTCAATGGAGGCTGAAACTGGCAATGCTTCCCCTGATCAAATGGCGCAATCAGTCGCATACCCTCAATTGCAATGCGATTATAATCCAGAAAAGAAAGTCGCAGAAAATGACCAGCCTATTATGAAAACAGTTTCGTCAGAACAACTAGAGAACGGCTGCAGGAAATCTGTCGTTGGATTGAGGAAGGCTACTAATCCTGCGTTTATTGCAGCACAGTCGAGATTTGAAGCACTGAGTTCAACAGCAAACTCTGGAAAATCAACTAGTTTATCCTTGGAAGAAAACAGGGAGCCTCTGGCAGATAGTGCAGTAGAAACCAAAGAGCTGGACAGTTCCGAAAATATTTCTCTCCCTGGATCTAGAGTGATCCAATCTGGAGGCTCTGAATGTGGCACAGAGCTCTCTATTTCTTCCACACTTGATTCCCCTCACAGATGTGGTTCCGCAACCTTCGAGTTAGAACACAATGGTAATGTTTTAGCGGAAGACATTCCTGATTCCATCGCAAGTAAGAATGCAGAAGTTGACGCTCCCATTCCATCGTCAAACTTATCTCAACCTATCATGGACGAGCCAAAAAATTCCGATCTTGCAATTTGCGAATCCATCATTTCAGAGGCCAGCTTGGACCCTGGAACGATTGATGTAAAGGCCGAAAGAAACATATCTCATCAGCCGACGGAAGTGGCCTCTGAAACCGGCAATCAAGCATGCGGATTATCTCCAGAAGCTTCTCCGAAGAGCCATATAACTGTCCCAGAATCACAAGGGACGCCTTCTAGTCAGTTATCTGTGAAAGCTAATAAGAACAAGGTCGATAACAGTGGATCCAACTTGAAGCGGAAGTCCCTCTCTGCTGGTAAGAAATCGCTCTCGAACAACACCCATAATTCAGGATCAAGAATTAGTCCAGACCATTCGGCCAAAGATCAGAAGAATGGAAAGAGGCGCAATTCCTTTGGCTCGGCAAGACCTGACAATGTTGAGCTAGAGTCAAGAGATAGCACCTCTAATAACTCGCTCCCTCATTTCATGCAAGCCACTGAATCTGCAAGAGCCAAGCTAAATTCTAACAACTCTCCGAGATCGAGTCCAGATATTCAAGACAGAGATGTCTACATTAAAAAGAGACATTCCTTATCCGGTACCAACGGAAGGCAAGGGTCTCCCCGCATTCAACGGTCAATGTCTCAACCACAGCAGAGTGCAAAAGCAAATGAGGAACTAATGTTGATTGAGAATCTTCCCGAGGTGAGCATACATATAGAAAAAGGTGTTGAAGATATCGTGATTGGAATAGATCGGTGGCGCTTCGGATCGGGAATCACGGCTTCGGGAGGAACTACGGCCGACGACGCGGACGGAGCTTCTGTCCTCGGCGATCGACGACGCGCTGCTCGTCACTGCGGTTCTGGAGCGACGGATCGTTCGGCACTGGATGAGATGCAAGTTCGCGGCGCTGTTGCTGGAGAAGAAGATGAAGACCGGGCAGCTTAG 4236 45.7 MSAVEVENKVEDGKEKKSEKGGEVLFCGGTDWDAIGRRKGPDGNLISPTRLRPLINVNIRFIASGCSSCHCVALDVEGRCYTWGRNEASSVFQKGQLGHGDKLQRDRPTVVSALAKYKIVKAGAGRSHTVVITDEGHSLSFGWNKHGQLGSEIELYPVRCLVSEVTTTACGGDFTVWLSAVEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPKAIASLSGEVIVKVACGTNHTVAVDANGFVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRQNMLPPNAVVSAGSANSACTAGGGQLYMWGKVKNTGDDWMYPKPLLDLSGWNLRCMDSGNMHFFVGADSSCISWGHAQYGELGYGPTGQKSSAVPKKVEILEGMHVISVACGMGHSMVIVDRTDGADQLDKLDIYDGVASAAAETETQQNKALAVKQSAKKNAKTSDKSRKKRKSKDLSDSEEEEEEEDEEEDDADLEINSSGEEENGEVEIKRRRGKKGSGGRGRGSNKSVSEGKGSGGGRGRPAKTTQMDRKSLMNCFGTHQEGSSTRVAIPRCCVRIRIENEDLSERHTCTNTNKATDEKRGWSFRKRSATQRVLSNSVITETPPSEFKDSFATAGLDFEQTANSIVPEKKFVTDCVNEKPQLSCPENAKPFEVVDSTHDENRDDDQMEESIAIVIQTSIRGLLAQMALTKLKKLVKLQAAVRGHVVRRHAVGTLRCIQAIVKMQALVRARSSHQSLGGSNGDKSDRKNEHDLNRFETRENKEFDKSKVMYISIEKLLSNRLAQQLLDSTPKNTSIKIKCDPSKSDSAWKWLERWMSVSSVDIVEQNDAELIEEKAGNEKEENFVSQLDHGIDSEVCKSDNAIFIDKQSTLPPEGEAELITCEDESSEVEACEATSSSPRETEEMEDMSMEAETGNASPDQMAQSVAYPQLQCDYNPEKKVAENDQPIMKTVSSEQLENGCRKSVVGLRKATNPAFIAAQSRFEALSSTANSGKSTSLSLEENREPLADSAVETKELDSSENISLPGSRVIQSGGSECGTELSISSTLDSPHRCGSATFELEHNGNVLAEDIPDSIASKNAEVDAPIPSSNLSQPIMDEPKNSDLAICESIISEASLDPGTIDVKAERNISHQPTEVASETGNQACGLSPEASPKSHITVPESQGTPSSQLSVKANKNKVDNSGSNLKRKSLSAGKKSLSNNTHNSGSRISPDHSAKDQKNGKRRNSFGSARPDNVELESRDSTSNNSLPHFMQATESARAKLNSNNSPRSSPDIQDRDVYIKKRHSLSGTNGRQGSPRIQRSMSQPQQSAKANEELMLIENLPEVSIHIEKGVEDIVIGIDRWRFGSGITASGGTTADDADGASVLGDRRRAARHCGSGATDRSALDEMQVRGAVAGEEDEDRAA 1411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55714162 55732846 + BLOR01588 Blo01g01588 56028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1022 1041 - -
Blo01g01588 1411 PRINTS Chromosome condensation regulator RCC1 signature 252 266 IPR000408 -
Blo01g01588 1411 PRINTS Chromosome condensation regulator RCC1 signature 236 252 IPR000408 -
Blo01g01588 1411 PRINTS Chromosome condensation regulator RCC1 signature 138 154 IPR000408 -
Blo01g01588 1411 PRINTS Chromosome condensation regulator RCC1 signature 119 132 IPR000408 -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 463 487 - -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1084 1106 - -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 427 533 - -
Blo01g01588 1411 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 404 IPR000408 -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 992 1041 - -
Blo01g01588 1411 Pfam IQ calmodulin-binding motif 701 715 IPR000048 GO:0005515
Blo01g01588 1411 PANTHER PROTEIN RCC2 9 532 IPR028641 -
Blo01g01588 1411 Gene3D - 12 154 IPR009091 -
Blo01g01588 1411 SMART iq_5 696 717 IPR000048 GO:0005515
Blo01g01588 1411 SMART iq_5 673 695 IPR000048 GO:0005515
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1137 1215 - -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1216 1232 - -
Blo01g01588 1411 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 136 181 IPR000408 -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 992 1008 - -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1089 1103 - -
Blo01g01588 1411 Gene3D - 671 721 - -
Blo01g01588 1411 SUPERFAMILY RCC1/BLIP-II 21 404 IPR009091 -
Blo01g01588 1411 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Blo01g01588 1411 Pfam Protein of unknown function (DUF4005) 1238 1311 IPR025064 -
Blo01g01588 1411 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 78 135 IPR000408 -
Blo01g01588 1411 ProSiteProfiles IQ motif profile. 696 725 IPR000048 GO:0005515
Blo01g01588 1411 ProSiteProfiles IQ motif profile. 674 702 IPR000048 GO:0005515
Blo01g01588 1411 Pfam Regulator of chromosome condensation (RCC1) repeat 187 246 IPR000408 -
Blo01g01588 1411 Pfam Regulator of chromosome condensation (RCC1) repeat 355 401 IPR000408 -
Blo01g01588 1411 Pfam Regulator of chromosome condensation (RCC1) repeat 77 132 IPR000408 -
Blo01g01588 1411 Pfam Regulator of chromosome condensation (RCC1) repeat 249 301 IPR000408 -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 427 442 - -
Blo01g01588 1411 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 249 IPR000408 -
Blo01g01588 1411 Coils Coil 453 480 - -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 888 915 - -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1123 1318 - -
Blo01g01588 1411 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 250 305 IPR000408 -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1245 1279 - -
Blo01g01588 1411 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 236 246 IPR000408 -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 737 758 - -
Blo01g01588 1411 Gene3D - 155 440 IPR009091 -
Blo01g01588 1411 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 122 132 IPR000408 -
Blo01g01588 1411 MobiDBLite consensus disorder prediction 1293 1318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01588 - - - zju:107420400 756.133
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01588 Blo12g00893 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01588 Blo-Chr1:55714162 Blo03g00778 Blo-Chr3:32448139 5.25E-25 dispersed
Blo01g01588 Blo-Chr1:55714162 Blo12g00893 Blo-Chr12:27105352 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01588 Blo_Chr01 FPKM 5.889791 8.063118 10.755433 10.620826 19.458286 20.386089 16.622442 20.62431 20.921825 24.567135