Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01601 ATGGCTGGTAACTTTGGGTTTGATATGGACCAAAGAGACATCGTTACTTTTTTGAATACGACAGTGGATAGTTTTATTGAAAATCGGCTGCTTGACAAACAAAAGCGAACCCAACAGAAAGAACAGTGTGCAGAGAGATTGGCTGCTGAAGACGGCAGCTCTGATAAAGATGAAGAGGTTAGATACTCTGATCAAGCTGTATTGGCAAATTTGGATTGGGGAATTGAAGCTCTTGAGGAAGCCATTGACACTTCCAACATAGAAACCAAGCTTGCTCGATTGAACCACGCCGAGAAGATGTTACAAGTGTGTGCTTTACTGAACTCCATAGACAAAACTGCTGGAATCCCAAATTTCTATCTTTCTGCATGGGCACATCTCAATCTTTCATACCTGTGTAAACTGCGAGGAAATCTTCAGAATTCTGTTCTTCATGTTCTTGAGATGTTTTTGGTGGACCCTTTTTTCTCAAGGATCGATTTCGCCCCTGAACTTTGGAAAGAAATTTTCCTCCCTCATATGAGCTCTATTATTGGGTGGTATTCTGAGCAGAGGCACAAACTTTTGATGGAAGTAATACCAGATTCTGATTTGTCCTTCACAGCTGATTTAGAACAATTCTTCCACGAGTCTTTGATCTTTTCACTAAGGCCTGATCAATTGGAGAAATTGCAAAAGTTAGAGCAAATCTATGGAGAATCATTAGATGAAAACACTAGGGTTTATGCAAAATATTTCAAGGACTGCATGGATTCAGATTCAAGTTCAACCAAGAAGGTTTCCCCAATGCTACCCATTGCAGAGCCACCAATGACTCCTCTTCATGAAGTGAGTTCTTCAATTCCAGATTTTGTAAAATTTGGACCCATCTTGCCTACGAGCGCTGGGTTTGCTTCAATTATGGAATCCAAGAATGATGCCAGAGAAGTAAGCAGCAGACTCGAAGTTATCTGTTCACCAAAGAAGCCTAACAACATTTCCAGGTGGGATGCTAAGAAGGATGTCTTGGTTGAGGAGAGCGAAGACGAGTCTGACTGCGAACCAAATGCTTCTTCCGTGGATCTAGATGATAATACATCTCCTAAGTCATTATCCGTTTCCAGCCTGAAAAGGGTGGAGGAAGAGCAAACAGAGCCTAAAACAGAAACATGTAAAGCGAAGAATCATGTACATTATTTGACAATCTTTTCACCCATCAATTCCCCTTCAATTCCTTCCCCAAACATTTTGTCTCCAAAAATGGAGGAACAAAGTAGAAAAGAACCTAGTTTATTGCGATTAAAGTCCAGCCGTATTGGTGATTCCAATGTCTCAACCTCTTTCCACGACTCTCCACACTTGAGAAATCACAGTACTAGTCCAGCAGACTCCGATGATGAAGAGGTGAAGAATACTCGCAAAAAGAAACATGGTGGGTCCAAAAGAATAAGCTTTGAAAATGTGAATAGACAAGCTTTAGAAAATAGCTCCCGCTCCACTTGGGAACTTGAAGAGGGCAGCCAGAGCCACGATCCATTGTCATCATCCGAAAACCTCGCTCATCGCTCTCGACTGCCAAAGGACTTTGTATGTCCAATAACTGGCCAGATTTTTTGTGACCCTGTTACACTTGAAACAGGTCAAACATATGAAAGAAAAGCAATACAGGAATGGGTGAAGAGAGGAAACACAACATGCCCTATTGCACGACAGCCTCTTTCTTCAAGCACATTGCCGAAAACAAATTATGTTCTAAAGAGATTGATAACGTCTTGGAAAGAACAACACCCTGATCTAGCTCAAGATAACTCACCAACAAATTCACTTGGCGTTTCCTGCATGAAAGAGAGTCCATTCGCCTCCACTCCTAGCAAAGAATTTTCAAGCTGCCCCAAGACATATGAGTATCTAAGCCAAAAGAGTGAAAGATTAATGCAAACAACTATATCCAAATCACTGTCGAGCGGAATATCTCAAGCCACTGTCACAACAATTATTATTGATTTGAAACCTTTAGTTTTGTGTCTCTGTACTTCAGAAAACTTGCAAGAGTGTGAAGCAGCTGTACTGGCCATAGCAAGATTGTTGAAGGAATCTAAGGCAAACCCTGTGGTTCATTCTTTTTTAGCTGAGTCAACAATTGTGAGTGGCTTTGTGGAAATTCTCTCAGCTTCTCAGAGTAGAGAAGTTCTTAGAACGTCTATTTATGTTCTCTCAGAGCTAATATCTGCAGATAAAAGCGTCATGGAGTCTCTTACAAATGTAGACTCGGATTTTGATTGCCTGGCTGCTTTGCTAAAGAAAGGCCTAGCTGAAGCTGCTGTTCTTATTTGCCTGTTGAGGCCTTCGTTTGTGCAGCTTTTCACTCACAATCTAATACCATCTCTGGTTCAGATAATCCTGCGAAAAAATGAAGACTTGGATGATCTTCATTTTGTAATGGAGCCGAAGGATGGTGCAACAGAGCTGCTTGAGCAAATTTTGATGGGAGGGGATGAAAATAGTAGGTCTCTAAATGCTTTAGCTGTAATTTCAGCAAATGCAATTCCTGCCTTAATCAAGAGTTTGAATGGGGAGACTGTGAGGAGGTCAACAGTGAACATACTTTTATGTTGCTTGCGAGCTGATAAAAGTTGCAGAAGCATAATAGCTAACAGAATTGAATCAAACCCCATACTCGAATTATTTCATGCAGGAAATGATGAAGAAAGAAGCGTCTGCATAGATTTTCTCTCGGAGCTGGTTCAGTTAAACAGGAGGACATTATGCAATAACGTGTTACAGAAAATTAGAGATGGAGGAGCATTTAGTACCATGCATGCGCTTCTTTTGTATCTTCAAATGGCTCCTATTGAAGAGCAACCTTCCTCTGCTTCTCTTCTCCTGCAGTTGGATCTCCTGGTCGAGCCCCGGAAAATGAGCATTTACCGGGAAGAAGCTCTAGACACACTTATTGAATCCATTCGGAGAAACGACTTTGCTGATAGTCAAATGATGGCTTTGGATGCCTTGATATCTCTGACAGGGCGTTTCACTCCCTCAGGAAGGTCATACACTGAAGTCTGGTTACTTAAGCTTGCAGGGTTTGATCAACCTTACAATTCTATGATGAAGGCAGAGCGACTCAGTGGACACGACAAAGATTTTGTCGAGACAGCGGAAGAGGAAGAAAAAGCTCTACGAAATTGGGAAAAAAGGTTGTGTCTGGTACTATGCAGCCATGACAAAGGCTCCATTTTCAAAGCATTGGGGGAATCCTTAAAGAGTGACTCTGTTGAGATGGAGAACTCATGTCTTCTAATTGCAACCTGGCTCTGTCACATACTTTTATTTCTTCCCGACATCGGTATACTAGAAACTGCTCGCAAGTCCTTGCTTCATCAACTCATCAATGTACTTCACTCATCTAAAAATCTGGAAGAGAGAATATTAGCGACCCTTGCTCTGAAAACATTTATAAATGATCCAGCTGCACTTGAAGAACTGGGGCTGCATGCCAAAAGCATTTACAAAATCTTGAGAAAGATTAGGAGGAAGGCAGTAGTTGCAACTGATATATTAAAAGCCTTGATCACTTTGCCATCTGTTAATGTAACGGAGCTCTGGCAATATTCTGAAGTTGCAGAGCTAGACTCGTGCATTAATGGAGATGTTCTGACCTTGATTCACCTTAAAGGTTTTCTTCTCAGTGGTCATTCCGATGGAACCATCAAGGTTTGGGGTGCAGGGAAGAGAACATTGAAGCTGGTTCAAGAAGCTCATCAACACACAAAAGCAGTAACATGCCTCAATGCCTCGACTTCTGGTGACATAGTTTACAGTGGTTCACAGGACAAAACAATTCGGGTCTGGGCAGTCAAACATGAAGAAATTCAATGCATTCAAGTCCACGACGTGAAAGAGGCAGTACACTACTTGACAGCCAATGTTAATGTAGCATGCTTTATCTCTCAAGGAGGAGTTAAGGTCTATAGCTGGAATGGGCTTCCCAAGCAGATAAATTTCAACAAACATGTCAAGTGCTTAACAATGTCAGAGGATAAACTATATTGCGGCTGCTCAGACAGTATTCAGGAGGTGGATTTGTCCACACACACATCAACCGTATTCTATGCTGGGATTAGAAAATTATTGAGCAAGCAAACCATATATTCGTTGCAAATTCATGATGGTCATCTCCATGCTTGTGGTTCTTCAGTCGATGGAATAGCTGGAAGGATATTCTCCCTCTCCACCAAGGAAGTAGTAGGATCATTCTCAACCAGCATTGACATCCATAACATAGCCATAACCAGCGATTGCATATTTACATCAACAAAAAGTGGAATCATAGAGCTATGGCAAAGAGAAAAAATTTCAAAAATTAATTCCATTAAAAAAGGTGGATTTGGACATGCAAAAATTACATCCTTGACAACAGATACGGACGGGGGATTGCTTTTTGTTGGTTTCTCAGATGGAAAGATTCAGGTTCGCACTTGA 4461 41.36 MAGNFGFDMDQRDIVTFLNTTVDSFIENRLLDKQKRTQQKEQCAERLAAEDGSSDKDEEVRYSDQAVLANLDWGIEALEEAIDTSNIETKLARLNHAEKMLQVCALLNSIDKTAGIPNFYLSAWAHLNLSYLCKLRGNLQNSVLHVLEMFLVDPFFSRIDFAPELWKEIFLPHMSSIIGWYSEQRHKLLMEVIPDSDLSFTADLEQFFHESLIFSLRPDQLEKLQKLEQIYGESLDENTRVYAKYFKDCMDSDSSSTKKVSPMLPIAEPPMTPLHEVSSSIPDFVKFGPILPTSAGFASIMESKNDAREVSSRLEVICSPKKPNNISRWDAKKDVLVEESEDESDCEPNASSVDLDDNTSPKSLSVSSLKRVEEEQTEPKTETCKAKNHVHYLTIFSPINSPSIPSPNILSPKMEEQSRKEPSLLRLKSSRIGDSNVSTSFHDSPHLRNHSTSPADSDDEEVKNTRKKKHGGSKRISFENVNRQALENSSRSTWELEEGSQSHDPLSSSENLAHRSRLPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWVKRGNTTCPIARQPLSSSTLPKTNYVLKRLITSWKEQHPDLAQDNSPTNSLGVSCMKESPFASTPSKEFSSCPKTYEYLSQKSERLMQTTISKSLSSGISQATVTTIIIDLKPLVLCLCTSENLQECEAAVLAIARLLKESKANPVVHSFLAESTIVSGFVEILSASQSREVLRTSIYVLSELISADKSVMESLTNVDSDFDCLAALLKKGLAEAAVLICLLRPSFVQLFTHNLIPSLVQIILRKNEDLDDLHFVMEPKDGATELLEQILMGGDENSRSLNALAVISANAIPALIKSLNGETVRRSTVNILLCCLRADKSCRSIIANRIESNPILELFHAGNDEERSVCIDFLSELVQLNRRTLCNNVLQKIRDGGAFSTMHALLLYLQMAPIEEQPSSASLLLQLDLLVEPRKMSIYREEALDTLIESIRRNDFADSQMMALDALISLTGRFTPSGRSYTEVWLLKLAGFDQPYNSMMKAERLSGHDKDFVETAEEEEKALRNWEKRLCLVLCSHDKGSIFKALGESLKSDSVEMENSCLLIATWLCHILLFLPDIGILETARKSLLHQLINVLHSSKNLEERILATLALKTFINDPAALEELGLHAKSIYKILRKIRRKAVVATDILKALITLPSVNVTELWQYSEVAELDSCINGDVLTLIHLKGFLLSGHSDGTIKVWGAGKRTLKLVQEAHQHTKAVTCLNASTSGDIVYSGSQDKTIRVWAVKHEEIQCIQVHDVKEAVHYLTANVNVACFISQGGVKVYSWNGLPKQINFNKHVKCLTMSEDKLYCGCSDSIQEVDLSTHTSTVFYAGIRKLLSKQTIYSLQIHDGHLHACGSSVDGIAGRIFSLSTKEVVGSFSTSIDIHNIAITSDCIFTSTKSGIIELWQREKISKINSIKKGGFGHAKITSLTTDTDGGLLFVGFSDGKIQVRT 1486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55876436 55882485 - BLOR01601 Blo01g01601 56041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01601 1486 MobiDBLite consensus disorder prediction 477 512 - -
Blo01g01601 1486 SUPERFAMILY WD40 repeat-like 1219 1484 IPR036322 GO:0005515
Blo01g01601 1486 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1485 - -
Blo01g01601 1486 MobiDBLite consensus disorder prediction 452 467 - -
Blo01g01601 1486 MobiDBLite consensus disorder prediction 340 385 - -
Blo01g01601 1486 Pfam WD domain, G-beta repeat 1247 1277 IPR001680 GO:0005515
Blo01g01601 1486 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1485 - -
Blo01g01601 1486 SMART WD40_4 1196 1234 IPR001680 GO:0005515
Blo01g01601 1486 SMART WD40_4 1405 1441 IPR001680 GO:0005515
Blo01g01601 1486 SMART WD40_4 1239 1278 IPR001680 GO:0005515
Blo01g01601 1486 SMART WD40_4 1444 1486 IPR001680 GO:0005515
Blo01g01601 1486 MobiDBLite consensus disorder prediction 368 385 - -
Blo01g01601 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1246 1277 IPR001680 GO:0005515
Blo01g01601 1486 SUPERFAMILY RING/U-box 514 590 - -
Blo01g01601 1486 MobiDBLite consensus disorder prediction 397 413 - -
Blo01g01601 1486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1246 1277 - -
Blo01g01601 1486 SUPERFAMILY ARM repeat 661 1155 IPR016024 -
Blo01g01601 1486 CDD RING-Ubox_PUB 522 564 IPR045210 -
Blo01g01601 1486 MobiDBLite consensus disorder prediction 351 367 - -
Blo01g01601 1486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 599 IPR013083 -
Blo01g01601 1486 MobiDBLite consensus disorder prediction 397 512 - -
Blo01g01601 1486 Gene3D - 1218 1486 IPR015943 GO:0005515
Blo01g01601 1486 ProSiteProfiles U-box domain profile. 517 592 IPR003613 GO:0004842|GO:0016567
Blo01g01601 1486 Gene3D - 660 879 IPR011989 -
Blo01g01601 1486 MobiDBLite consensus disorder prediction 429 451 - -
Blo01g01601 1486 Pfam U-box domain 519 589 IPR003613 GO:0004842|GO:0016567
Blo01g01601 1486 SMART Ubox_2 521 585 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01601 - - - vvi:100245471 1821.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01601 Blo-Chr1:55876436 Blo08g00300 Blo-Chr8:4198067 2.61E-14 dispersed
Blo01g01601 Blo-Chr1:55876436 Blo11g00735 Blo-Chr11:9692416 1.71E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01601 Blo_Chr01 FPKM 2.703066 2.401402 0.567727 0.564894 13.175945 12.736814 13.425928 0.232274 0.128666 0.177944