Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01604 ATGTTCGAAGCGCCCAGCGACGAAGAAGTTATCTACTCTGAGGTCGATACCGGCGACGACGAACTCGAAGAAGATGAACTTCTAACTTCTCACCGCCGTACTGAATCTCCTTGGGAATTCGGTTCCTACTATGGATCAGTCGATGAAGAACATGCGAGACGCAATACTACCTCCATTGATTCCAAAATCACCAAAGCTCTCAAACAACGCTCTATACCGTTTGATTCGTCAATCGTTGATGATAACGAAAGCGTTGAATCGGAATCCGACGGACAAGAAAACTTCGTACAAGAAGAAGAAGAAGACGACGACGACGGTGAAGTAGCTAGTGATGCTGGTCTTAGGCAGCCTTTTTATGAGTATTTAGATGGAGCTGCTCTCCACGCCAATTCATTTATGGAACTCCATCTTTCGCGCCCTTTACTTCGTGCTTGCGAAGCTTTGGGCTATTTGAAGCCTACGCCAATTCAGGCGACATGCATACCATTGGCAATTTCTGGGCGTGATATATGTGGAAGTGCAATTACTGGTTCGGGAAAGACAGCTGCCTACACCTTGCCTACTTTGGAAAGGTTATACAATGCTCCAAAGCGCAGTCGAGCAATAAGAGCTCTTATTCTTACACCAACAAGAGAATTGGCGGTTCAGGTTCATAGTATGATTGAAAAACTTGCACAGTTTACAGACATCAGATGTTGTCTGATTCTTGGTGGGGTTTCAATAAAGACTCAAGAGGCAGCCTTAAGGTCAATGCCAGACATTGTTGTGGCAACTCCTGGGCGCATGATAGATCATTTACAAAATTCTATGTCTGTTGATTTGGATGATCTTGCAATTCTTATTCTTGATGAGGCAGATAGACTATTGGAGGAAAATTTTGCAATGGAAACTAAAAGGCTGGTTTCCCTTTGTCCACGGAACAGACAAACAATGCTCTTCTCAGCTACAATGACAGACAAGGTTAATGAGCTTATCACGCTTTCTTTAACCAATCCCTTGCGCATCTCAGTTGACCCATCTATGAAACGGCCAGCAGCATTGACAGAGGAAATTGTTAGGATCCGGAGAATGCGTGAAGCAAATCAGGAAGCAGTTCTTTTTTCATTATGTTCGAAGACATACACTTCTAAAGTTATCATCTTCAGTAAAACAAAACAAGAAGCACACAGGTTAAAAATTTTATTTGGACTTACTGGCTTTAAAGCTGCTGAGCTTCATGGAAATCTTACCCAAGTCCAGCGTCTTGACGCCTTGGAACTTTTCAGGAACCAACTAGTTGATTTTCTGATTGCGACAGATGTTGCTGCTCGTGGGCTCGACATTAAGGGTGTCCAAACAGTCATAAATTATGCATGCCCTCGTAATCTCACTAGCTACACTCATCGCGTGGGTCGAACAGCTAGAATTGGTAGGAAAGGACATGCTGTCACTTTTGTGCTAGATAACGATCGTTCACTTCTAAAATCAATTGCTAAAAGGGCTGGTGCAAAGCTGAAAAGCAGAAATGTAGCTGAGCAATCAATAACTAAGTGGTCTCAGATAATTGAGCAAATGGAAGATCAAGTTAAAGGAATTTTGCAGGAAGAGAGAGAAGAGCGAGCCCTAAGAAAAGCCGAAATGGAAGTAACAAAGGCAGAAAATATGATTGCTCATAAGGAGGAAATTTTTTCACGCCCAAAAAGAACGTGGTTTGTGACAGAAAAAGAGAAGCGGCTTGTAGCTAAGGCGACAAAGGAAAACTTGGAGAAGGAAAACAAGTCTGGGAAGGTGATAATCAGCGCACAAGTAGCAGAGGATTTAAAAGCGAAAGAAAAGAGGAAGCGTGAACGGGAGAAGAATTTACCTCGGAGGAAGCGGAGAAAATTGGAAGCAGCTAGAGAAATGTTGGAAGAAAATAAGATGGGTGATATAGGAGGCAGTGGGAAAAATGAGGAAAAATCTGGAATGTCGCTTGTTGACCTTGCATATAGACGTGCAAAAGCTGCAAAGGCTGCAAAGAAGGCAGTTGATTCGGGCAAGATTGTGAGGAAGGTAAGTGAATCCAAGCACCATTCAAAAAGATCAAAATCGAGACCAGAAGAGATGAGAGAGTTGTATCAGAGTGATATGAATGAGAGAAAGCAGAAAAGAAATGGCAGTAGCACCGGTCGGAAAAAGTCGAAGAATTCATTTAAGAGCAAGTCAAGGTAG 2190 42.74 MFEAPSDEEVIYSEVDTGDDELEEDELLTSHRRTESPWEFGSYYGSVDEEHARRNTTSIDSKITKALKQRSIPFDSSIVDDNESVESESDGQENFVQEEEEDDDDGEVASDAGLRQPFYEYLDGAALHANSFMELHLSRPLLRACEALGYLKPTPIQATCIPLAISGRDICGSAITGSGKTAAYTLPTLERLYNAPKRSRAIRALILTPTRELAVQVHSMIEKLAQFTDIRCCLILGGVSIKTQEAALRSMPDIVVATPGRMIDHLQNSMSVDLDDLAILILDEADRLLEENFAMETKRLVSLCPRNRQTMLFSATMTDKVNELITLSLTNPLRISVDPSMKRPAALTEEIVRIRRMREANQEAVLFSLCSKTYTSKVIIFSKTKQEAHRLKILFGLTGFKAAELHGNLTQVQRLDALELFRNQLVDFLIATDVAARGLDIKGVQTVINYACPRNLTSYTHRVGRTARIGRKGHAVTFVLDNDRSLLKSIAKRAGAKLKSRNVAEQSITKWSQIIEQMEDQVKGILQEEREERALRKAEMEVTKAENMIAHKEEIFSRPKRTWFVTEKEKRLVAKATKENLEKENKSGKVIISAQVAEDLKAKEKRKREREKNLPRRKRRKLEAAREMLEENKMGDIGGSGKNEEKSGMSLVDLAYRRAKAAKAAKKAVDSGKIVRKVSESKHHSKRSKSRPEEMRELYQSDMNERKQKRNGSSTGRKKSKNSFKSKSR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55902813 55909037 + BLOR01604 Blo01g01604 56044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01604 729 MobiDBLite consensus disorder prediction 686 711 - -
Blo01g01604 729 MobiDBLite consensus disorder prediction 659 729 - -
Blo01g01604 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 335 IPR014001 -
Blo01g01604 729 SMART ultradead3 149 350 IPR014001 -
Blo01g01604 729 MobiDBLite consensus disorder prediction 1 33 - -
Blo01g01604 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 509 IPR001650 -
Blo01g01604 729 MobiDBLite consensus disorder prediction 81 108 - -
Blo01g01604 729 Coils Coil 501 555 - -
Blo01g01604 729 PANTHER BNAA01G17110D PROTEIN 34 708 - -
Blo01g01604 729 MobiDBLite consensus disorder prediction 659 678 - -
Blo01g01604 729 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Blo01g01604 729 MobiDBLite consensus disorder prediction 77 110 - -
Blo01g01604 729 SMART helicmild6 385 470 IPR001650 -
Blo01g01604 729 CDD SF2_C_DEAD 347 479 - -
Blo01g01604 729 Gene3D - 357 562 IPR027417 -
Blo01g01604 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 490 IPR027417 -
Blo01g01604 729 MobiDBLite consensus disorder prediction 616 640 - -
Blo01g01604 729 Gene3D - 119 338 IPR027417 -
Blo01g01604 729 MobiDBLite consensus disorder prediction 9 24 - -
Blo01g01604 729 CDD DEADc_DDX27 141 336 - -
Blo01g01604 729 Pfam Helicase conserved C-terminal domain 369 470 IPR001650 -
Blo01g01604 729 PANTHER RNA HELICASE 34 708 - -
Blo01g01604 729 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Blo01g01604 729 Pfam DEAD/DEAH box helicase 154 324 IPR011545 GO:0003676|GO:0005524
Blo01g01604 729 MobiDBLite consensus disorder prediction 601 646 - -
Blo01g01604 729 MobiDBLite consensus disorder prediction 712 729 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01604 K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27 [EC:3.6.4.13] - zju:107412453 942.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01604 Blo-Chr1:55902813 Blo08g00257 Blo-Chr8:3271493 5.24E-79 dispersed
Blo01g01604 Blo-Chr1:55902813 Blo03g01343 Blo-Chr3:39798221 1.48E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1136 Blo01g01604 . Bda01g00477 . Bpe02g00342 . . Bma01g02375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010512 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 0 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01604 Blo_Chr01 FPKM 17.05261 18.11595 35.378876 36.215248 21.181387 22.696159 21.023123 71.945435 72.084518 67.399773