Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01605 ATGGCAGAGAAGACTGAAGCGAGGAAGCTTTTGTCGTCCACTAGTTTTCCATCACTGGGAAGCAGATTTCTCTATCTAATTCCGTTTCTGAAGTCTCTCATCGATTACTCTGTTTCTTTGCAACTTGATTTCTCAATGGAGATGGAGCTTGCCTCCAGTGGACGTCCGGAAGAGAATGATCCGGCCGTAATGGAGACGGAAACGAAGCCGGAAGAGAAGCGCCTTTCGTTCTTTGGCCTTTTTTCTGCTGCCGATTCGGTGGACTATTTCTTAATGTTTTTCGGCAGTCTCGGTGCTTGCATCCATGGTGCTGCGCTTCCTGTTTTCTTTATTTTGTTCGGTAGAATGATCGATTCGTTGGGGCATTTAAGCAAACAACCTCAAAGGTTATCGTCACAGGTATCAGAGAATGCTCTGTACTTAATCTATCTGGGTTTCATTGTATTCGTATCGGCTTGGATAGGCGTTGCTTTCTGGATGCAAACTGGGGAAAGACAAACAGCACGTTTGCGATTGAAGTACCTTCAGGCAGTTTTAAAGAAGGATATTAATTTCTTCGACACTGAAGCAAAGGATTCTAATATTATTTTTCATCTTTCGAGTGACGCAATACTTGTGCAAGATGCGATAGGTGATAAGAATGAAATGAAAACGAGATTGCTGAGTGACAAAAGTCTTCTTCTTTTGCATCTTATTGATGTAATTTCACAGGTTCGTACGGTGTATTCCTTTGTAGGAGAGGATAATGCCATTAAGGCATTTTCTGAGTCCCTGCAAAAAGCCCTTAAGCTTGGAAAGAAGAGTGGTTTTGCCAAAGGGGTAGGTGTAGGATTTACTTATGGTCTTCTGTTTTGTGCTTGGGCGTTGCTTCTTTGTGCGCTTGGTCAAGCAGCTCCGAACCTTGCTGCCATTGCAAAGGGGCGAGTATCTGCAGCCAATATAGTTGGAATGATTGATGACCATTCTAAGTCATCTAAGCGAATGGAAGATGGAGTGGTGTTGTCAAAAGTAGAAGGGCAATTTGACTTTTGTGATGTTTGCTTTGCTTATCCTTCACGACCTCAAATGGTCCTTGACAAGTTGAATTTTTCTATTAGTGCCGGAAAAACCTTTGCGGTTGTAGGCGCCAGTGGGTCAGGAAAGAGCACCATTATTTCTATGGTGCAACGTTTTTATGAACCATCCTCAGGTAAAATATTGTTGGATGGACATGATTTAAGATCAATACAGCTAAAATGGCTGAGAGAACAAATGGGATTGGTCAGTCAAGAGCCAGCATTGTTCGCCACCACAATAGAAAGCAACATTCTGTTTAGTAAAGAAGATGCAGGAATGAACGAAATTGTAGAAGCAGCTAAAGCAGCGAATGCACATTCTTTTATTCAAGAACTACCTGAAGGGTATTATACCCAGGTGGGAGAGGGAGGGACTCAACTTTCAGGAGGGCAAAAGCAAAGAATTGCCATTGCAAGGGCGGTGTTGAGAAATCCTAAGCTTTTACTTCTTGATGAGGCAACTAGTGCTCTTGATGCAGAATCAGAATTTGTTGTTCAGCAGGCATTGGATAGAATTATGTCAAATCGAACGACAATCGTCATTGCACATCGATTGTCCACAATCCAAGATGTCGATACCATCATTGTGTTAAAAAATGGCCAGGTTGTTGAGAGTGGAACCCACATGGAACTGATGGCTAAGAAAGGAGAATACGCAGCCTTGGTAAGCATGCAAGTAGCAGCTGACAAGGGCAACTTTGAACCAATGTCTCCGGCATGTTCCAGGCAGTCCAGCTTCCAAGAATCCCTCACTAGCCAGAACTATCTACCTGAGTTCAAGCCAATAATAATAACTGATTTGCAGACAAGCAGTCAAAGCATGTCCTTGCCAAACTCTTCCTCTGCTTCGTCAATCTGGGAGCTAGTAAAGTTAAATGCACCAGAGTGGCCATACGCACTACTCGGGTCAGTTGGAGCCATTCTTGCAGGAATCGAAGCTCCTTTATTTGCCCTTGGAATCACACATGTTTTAACTGCATTTTATTCTCCTCACAACGCCCAAATCAAAGCAGAAGTTCAACGAGTATCTCTTCTATTTGTTGGAGTTGCCATCGTCACTATTCCTATATATCTCTTACAACATTACTACTATACGTTGATGGGAGAACGGCTCACTGCTCGTGTTCGCCTCAAGATGTTCTCAGCTATCCTATCAAATGAAATCGGATGGTTTGATTTTGACGAAAACAACACTGGATCATTGACATCAATTTTAGCAGCAGATGCAACATTAGTAAGGAGTGCTCTTGCAGATCGACTATCTACGATTGTGCAGAACATAGCCCTCACTGTCTCTGCTTTTGTTATTGCCTTCACATTAAGCTGGCGCATAGCAGCTGTCGTCGTAGCCTCCCTCCCCCTTCTTATTGGAGCCTCAATTGCCGAGCAACTGTTTCTCAAGGGATTTGGAGGGGACTACAGTCGTGCCTACAATAGAGCAACTTCCATTGGTCGGGAAGCTATTGTTAACATTCGTACAGTCGCTGCATTTGGTGCTGAAGATCGGATATTAACCCAGTTTGCCTCTGAACTGAGCCAACCAAACAAACAAGCTCTGTTGAGAGGCCACATATCAGGCTTTGGCTATGGCTTAACTCAGCTTTTGGCCTTCTGTTCCTACGCACTTGCCCTTTGGTATGCATCCATTCTAATCAGCCATAAAGACTCGAATTTTGGAAACATAATGAAGTCTTTTATGGTTTTGATAATCACATCTCTGGCCATAGCAGAAACACTTGCTCTCACCCCAGATATTGTGAAGGGTACACAAACACTAGGATCAGTTTTCGGAATTCTCCATAGAAAATCTGCTATCGACCCAAACAATCCCTGGTCACAGCTTATAACTGAAATCAAAGGAGATATTGAGTTTCGAAATGTGAGTTTCAAGTACCCTGCAAGGCCTGATATCTCCATTTTTGAGGATTTGAGCTTTAAAGTGTCTCCAGGAAAGAGTCTTGCTGTCGTGGGCCAAAGTGGGTCAGGAAAGAGCACAGTGATTTCTCTGGTTATGAGGTTTTACGATCCAAATTCAGGATTCATCATGATCGACGGGAGCAACATTAGACTCTTAAATTTAAAAGCACTGAGGAAGAGAATTGGTTTAGTTCAGCAAGAGCCAGCACTATTCTCCACAACAATCTACGAAAATATCAAATACGGGAAAGACGAAGCGTCGGAAATCGAAATAATGAAAGCAGCGAAAGCAGCAAACGCGCACGACTTCATCTCCAGAATGCCCGACGGTTACGACACCAGCGTCGGCGAGAGAGGAGTTCAACTATCGGGAGGACAGAAGCAGAGAGTCGCAATCGCCCGAGCCATACTAAAAGATCCATCGATTCTTCTTCTCGACGAAGCAACGAGCGCACTAGACGCGGCCTCGGAGAAGCTGGTACAGGAGGCTCTCGATTCACTCATGGAGGGCCGAACCACCATTATAGTGGCGCACAGGTTGACTACAGTTCGAAATGCAGATAGAATTGGAGTTTTGAAGGATGGCAGAATGGCTGAAATTGGAAGCCATGAGCAGCTCATGAGAGAGTCTACAAGCTTATATAAACAGTTAACCAGTCTACAGCAGGAAAACGGCCTAAACGTTCATGATTAA 3666 43.84 MAEKTEARKLLSSTSFPSLGSRFLYLIPFLKSLIDYSVSLQLDFSMEMELASSGRPEENDPAVMETETKPEEKRLSFFGLFSAADSVDYFLMFFGSLGACIHGAALPVFFILFGRMIDSLGHLSKQPQRLSSQVSENALYLIYLGFIVFVSAWIGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDTEAKDSNIIFHLSSDAILVQDAIGDKNEMKTRLLSDKSLLLLHLIDVISQVRTVYSFVGEDNAIKAFSESLQKALKLGKKSGFAKGVGVGFTYGLLFCAWALLLCALGQAAPNLAAIAKGRVSAANIVGMIDDHSKSSKRMEDGVVLSKVEGQFDFCDVCFAYPSRPQMVLDKLNFSISAGKTFAVVGASGSGKSTIISMVQRFYEPSSGKILLDGHDLRSIQLKWLREQMGLVSQEPALFATTIESNILFSKEDAGMNEIVEAAKAANAHSFIQELPEGYYTQVGEGGTQLSGGQKQRIAIARAVLRNPKLLLLDEATSALDAESEFVVQQALDRIMSNRTTIVIAHRLSTIQDVDTIIVLKNGQVVESGTHMELMAKKGEYAALVSMQVAADKGNFEPMSPACSRQSSFQESLTSQNYLPEFKPIIITDLQTSSQSMSLPNSSSASSIWELVKLNAPEWPYALLGSVGAILAGIEAPLFALGITHVLTAFYSPHNAQIKAEVQRVSLLFVGVAIVTIPIYLLQHYYYTLMGERLTARVRLKMFSAILSNEIGWFDFDENNTGSLTSILAADATLVRSALADRLSTIVQNIALTVSAFVIAFTLSWRIAAVVVASLPLLIGASIAEQLFLKGFGGDYSRAYNRATSIGREAIVNIRTVAAFGAEDRILTQFASELSQPNKQALLRGHISGFGYGLTQLLAFCSYALALWYASILISHKDSNFGNIMKSFMVLIITSLAIAETLALTPDIVKGTQTLGSVFGILHRKSAIDPNNPWSQLITEIKGDIEFRNVSFKYPARPDISIFEDLSFKVSPGKSLAVVGQSGSGKSTVISLVMRFYDPNSGFIMIDGSNIRLLNLKALRKRIGLVQQEPALFSTTIYENIKYGKDEASEIEIMKAAKAANAHDFISRMPDGYDTSVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDAASEKLVQEALDSLMEGRTTIIVAHRLTTVRNADRIGVLKDGRMAEIGSHEQLMRESTSLYKQLTSLQQENGLNVHD 1221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55923490 55928809 + BLOR01605 Blo01g01605 56045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01605 1221 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 974 1210 IPR003439 GO:0005524
Blo01g01605 1221 Pfam ABC transporter 993 1141 IPR003439 GO:0005524
Blo01g01605 1221 CDD ABC_6TM_Pgp_ABCB1_D1_like 92 314 - -
Blo01g01605 1221 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 652 939 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo01g01605 1221 SUPERFAMILY ABC transporter transmembrane region 71 296 IPR036640 GO:0005524|GO:0016021
Blo01g01605 1221 Gene3D ABC transporter type 1, transmembrane domain 292 948 IPR036640 GO:0005524|GO:0016021
Blo01g01605 1221 SMART AAA_5 367 553 IPR003593 -
Blo01g01605 1221 SMART AAA_5 1001 1202 IPR003593 -
Blo01g01605 1221 CDD ABC_MTABC3_MDL1_MDL2 974 1212 - -
Blo01g01605 1221 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 233 441 - -
Blo01g01605 1221 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 418 541 - -
Blo01g01605 1221 Gene3D ABC transporter type 1, transmembrane domain 233 291 IPR036640 GO:0005524|GO:0016021
Blo01g01605 1221 Gene3D ABC transporter type 1, transmembrane domain 71 216 IPR036640 GO:0005524|GO:0016021
Blo01g01605 1221 Pfam ABC transporter 358 507 IPR003439 GO:0005524
Blo01g01605 1221 Gene3D - 964 1219 IPR027417 -
Blo01g01605 1221 Gene3D - 339 602 IPR027417 -
Blo01g01605 1221 Pfam ABC transporter transmembrane region 93 219 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo01g01605 1221 Pfam ABC transporter transmembrane region 224 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo01g01605 1221 Pfam ABC transporter transmembrane region 656 925 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo01g01605 1221 CDD ABC_6TM_Pgp_ABCB1_D2_like 642 957 - -
Blo01g01605 1221 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 93 212 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo01g01605 1221 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 230 291 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo01g01605 1221 ProSitePatterns ABC transporters family signature. 1113 1127 IPR017871 GO:0005524
Blo01g01605 1221 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 519 1212 - -
Blo01g01605 1221 Coils Coil 1194 1214 - -
Blo01g01605 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 577 IPR027417 -
Blo01g01605 1221 CDD ABC_MTABC3_MDL1_MDL2 342 577 - -
Blo01g01605 1221 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 341 576 IPR003439 GO:0005524
Blo01g01605 1221 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 233 441 IPR039421 -
Blo01g01605 1221 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 519 1212 IPR039421 -
Blo01g01605 1221 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 418 541 IPR039421 -
Blo01g01605 1221 ProSitePatterns ABC transporters family signature. 479 493 IPR017871 GO:0005524
Blo01g01605 1221 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 76 215 - -
Blo01g01605 1221 SUPERFAMILY ABC transporter transmembrane region 640 1126 IPR036640 GO:0005524|GO:0016021
Blo01g01605 1221 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 76 215 IPR039421 -
Blo01g01605 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1212 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01605 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - qsu:112013271 1637.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01605 Blo-Chr1:55923490 Blo03g00872 Blo-Chr3:34541574 1.27E-122 dispersed
Blo07g01329 Blo-Chr7:33513564 Blo01g01605 Blo-Chr1:55923490 1.98E-57 dispersed
Blo11g00925 Blo-Chr11:19531915 Blo01g01605 Blo-Chr1:55923490 3.19E-11 dispersed
Blo14g00050 Blo-Chr14:301906 Blo01g01605 Blo-Chr1:55923490 7.96E-62 dispersed
Blo01g01605 Blo-Chr1:55923490 Blo07g01389 Blo-Chr7:33963366 1.69E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1146 Blo01g01605 . Bda01g00476 . . . . Bma01g02378 . . . Cma09g00095 . . . . . . . . . . . . . . . . . . . . Cone7ag1900 . . . . . . . . . . . . . . . . Cmo09g00092 . . . Car09g00083 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013207 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01605 Blo_Chr01 FPKM 17.230158 15.206587 14.455807 14.109315 10.019334 7.92389 10.991778 18.095881 20.906553 24.577444