Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01606 ATGGGATTCTTTTTCAGCTCCGTCAAAGGATTTGACTATGTTCCAACAGTTTTCGACAACTTTAGTGCCAATGTTGTAGTTGATGGAAGCACTGTCAACCTAGGGTTATGGGATACTGCAGCAGGTCAGGAGGATTACAATAGGTTAAGACCATTGAGCTATCGAGGGGCTGATGTCTTTATACTTGCTTTCTCTCTGATAAGCAAGGCTAGTTATGAAAATGTCCCAAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCAGGTGTTCCCATTATACTTGTTGGAACGAAGCTGGATCTTCGAGATGACAAACAGTTCTTCATAGACCATCCTGGTGCAGTGCCCATTACTACAGCTCAGGGAGAGGAATTGAGAAAATTGATTGGAGCTCCTGCATACATTGAATGCAGTTCAAAAACACAGCAGAGAGCGCGATCGAGAATGATTCCGGTGGGAATTGAAGACGAGGAAAAATGGCTTGCTGAAGGAATTGCTGCCATTCAACACAATGCCTTTTATATGCATCGTGCTGTCGACGCTAATAATCTTCGAGAAGCACTCAAATACTCGGCTCAGATGCTATCCGAACTTCGCACTTCCAAGCTTTCCCCGCATAAATATTACCAACTCTATATGAGAGCATTTGATGAGCTGAGGAAGTTGGAAATGTTTTTTAAGGACGAAAGCAGGCATGGCGTTTCAATTGTTGATTTGTATGAACTTGTTCAACACGCCGGCAACATATTGCCTAGACTGTATCTTCTGTGTACTGTGGGATCCGTATACATCAAATCAAAGGAGGTCCCTGCTAAAGATATCCTCAAAGATCTTGTGGAAATGTGTCGTGCTGTTCAACACCCAACACGTGGACTCTTCCTAAGAAATTATCTTGCTCAAGTCAGTAGAGACAAGTTACCTGACATTGGTTCAGAATATGAAGGAGATGGTGATACAGTCATGGAGGCAGTGGAGTTTGTGCTGCAAAATTTTACTGAAATGAATAAGCTTTGGGTGCGAATTCAGCATCAGGGACCAAATCGAGTGAGAGAAAAGCAGGAAAAGGAAAGAGGCGAGCTCCGCGATCTTGTGGGGAAAAATCTTCACATTCTCGGTCAAATTGAGGGTGTGGACATTGAAATGTACAAAAACACTGTTCTTCCTAAAGTCTTGGAGCAGGTTGTCAACTGCAAAGATGAGCTTGCTCAATATTATTTGATGGATTGCATAATTCAAGTTTTTCCTGATGAGTACCATCTGCAAACCTTAGATATATTGTTGGGTGCTTGCCCACAACTTCAGGTGAGGATAGAATCGGCCAGATTCGAGAGGATTGGGGGAATTTTCATGAAAAATTTTTCCCAAGAGTTGGGAACATTGAAGGAGAACATTGCGGCACTCCAAGGCTTGAAAGCCGACATGGCTTCAAAGGCCGACTTGGCTTCAATTGTGGAACAATTGGCAGCCCTTTTTGTGTCTCAAACGCAAACGTAG 1494 43.17 MGFFFSSVKGFDYVPTVFDNFSANVVVDGSTVNLGLWDTAAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVPKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQRARSRMIPVGIEDEEKWLAEGIAAIQHNAFYMHRAVDANNLREALKYSAQMLSELRTSKLSPHKYYQLYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKEVPAKDILKDLVEMCRAVQHPTRGLFLRNYLAQVSRDKLPDIGSEYEGDGDTVMEAVEFVLQNFTEMNKLWVRIQHQGPNRVREKQEKERGELRDLVGKNLHILGQIEGVDIEMYKNTVLPKVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLDILLGACPQLQVRIESARFERIGGIFMKNFSQELGTLKENIAALQGLKADMASKADLASIVEQLAALFVSQTQT 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55941341 55947541 + BLOR01606 Blo01g01606 56046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01606 497 Pfam Ras family 12 145 IPR001806 GO:0003924|GO:0005525
Blo01g01606 497 ProSiteProfiles small GTPase Rho family profile. 1 179 - -
Blo01g01606 497 CDD Rop_like 12 148 - -
Blo01g01606 497 PANTHER VACUOLAR SORTING PROTEIN 35 152 438 IPR005378 GO:0015031|GO:0030906|GO:0042147
Blo01g01606 497 SMART rab_sub_5 13 156 - -
Blo01g01606 497 SMART rho_sub_3 12 151 IPR001806 GO:0003924|GO:0005525
Blo01g01606 497 TIGRFAM small_GTP: small GTP-binding protein domain 13 136 IPR005225 GO:0005525
Blo01g01606 497 Coils Coil 450 470 - -
Blo01g01606 497 Pfam Vacuolar protein sorting-associated protein 35 160 438 IPR005378 GO:0015031|GO:0030906|GO:0042147
Blo01g01606 497 Gene3D - 5 159 IPR027417 -
Blo01g01606 497 ProSiteProfiles small GTPase Ras family profile. 1 321 IPR001806 GO:0003924|GO:0005525
Blo01g01606 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 143 IPR027417 -
Blo01g01606 497 ProSiteProfiles small GTPase Rab1 family profile. 1 207 - -
Blo01g01606 497 PRINTS Transforming protein P21 ras signature 134 156 - -
Blo01g01606 497 PRINTS Transforming protein P21 ras signature 25 47 - -
Blo01g01606 497 PRINTS Transforming protein P21 ras signature 8 24 - -
Blo01g01606 497 PRINTS Transforming protein P21 ras signature 88 101 - -
Blo01g01606 497 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 152 438 - -
Blo01g01606 497 SMART ras_sub_4 4 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01606 K18468 VPS35; vacuolar protein sorting-associated protein 35 - pvy:116141832 526.939
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01606 Blo18g00771 CCT
Blo01g01606 Blo18g00771 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01606 Blo-Chr1:55941341 Blo16g00090 Blo-Chr16:2262959 1.12E-174 dispersed
Blo01g01606 Blo-Chr1:55941341 Blo16g00089 Blo-Chr16:2258854 3.55E-87 wgd
Blo01g01606 Blo-Chr1:55941341 Blo18g00771 Blo-Chr18:21755109 3.57E-81 wgd
Blo01g01606 Blo-Chr1:55941341 Blo04g00876 Blo-Chr4:9826122 5.77E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033783 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01606 Blo_Chr01 FPKM 26.147697 29.522795 18.023851 17.366787 11.901354 11.431999 12.475224 23.31123 23.349211 22.502365