Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01608 ATGCAACAAGGAGATTACAGTTCCGCTCCGTATTACCAATACCCGCACCTCCAAAACCCTAATCCTATCCCCAATTCTACTTCCACTCCCCCCGATCTCTACCAACCGACCCCCTTCGCCTCTGCGCCTCCCTTTTCCAACAATTACGCTCCCATTCCCTCCGATTATTCTGCTCATCCCCCTAATTACTCTTCATATTCTCAGAATTCCGATCATCTCTCCGTCTCCCCCACTGCTCCTTCCTTTTCTCCCTCCTCCAACCCTAATTTCCAGCCTTTCAATCCCACTCCTCAGCCCTCTCCTTTTCCCCCGTTTGAATCCCACGTTCCCTTTCAATCTTTGCCACAGCAGCAGTCTTATTATTCACCTTATGATCAGCATCAGGCATCTCACAATTATGCCCCATCGTCCTCCTCTCTTTCCGCCGACTCTGTCTCTAATCTGGCTCTGAGTTCCAATTCTCAGTACTCGTCCGAGCAATATGCTCAATTTGGATCCTCCGTGCCGCCTGCATACGAGAACCCCTATGAGAATTCAGGGAAATTTAATCAGGGTAGTGGATATGTCGATGATAAATATGGAAGTTACAATCAAAACAAATCTGGTTTCGGTTTGGATCAGTACGGGAAGAGGATGGACAATGGTGTCTCCCGTTATGAATCTAGTTATGATGATGGCTATGGGGACGGCGTGTTTGCTTACCAAGGGGGGAAGGTTGAGCCATATGGAGCTCGTGGTACTGCCCCCAACTCTTCGACATGGACTGGATTTGATGATTATGGGAGGCCAATCAGTTTTCCTTCTGGAAAAGAGCCTTCCAGTGGTTCAAGCAAGATTGTGAGAGCCACTCCAAAAGCAGATACTCAGGATGACGCCAAGAGTGGTGTGCAAAAGTTTCGGGTTAAGCTGTTGGCTGAAAGCGGAGGCCAGACCACCACGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTTGATCAAAATACTGGTCGGACATTGAGAATTTATCCTCTTGAGACCATTACAAGATGTGAAGTGATAGAGTCATCCACATTAGCATTTTGGTCTAAGAGCTCTGTGGATATTGAGCCGCGAAGGATAAGATTGCAGTCCAATAGTTACACTTCAAATACTCTTTTGGACACAGTGACTGCAGCAACAGTTCAGTTTAAGGAGATGGGTGGAAGAAGCAGGCCACCTGATTCTTTGAAGTCGAGTGAACAGTCTATAGAAAGGAAAAAAGGATTTGGTGATTGGATGAGCTTGATGAAGCCTGTAAATGTGGAAAAAGATCATTGGGTTCCTGATGAAGCCGTTTCTAAGTGCACGACTTGTAGAACAGATTTTGGTGCTTTTGTGCGCAAGCATCACTGCAGGAACTGTGGGGATATTTTCTGTGACAAATGCACTCAGGGTCGAATTACTTTAACTTCCGAGGAGAATGCCACTCTGGTTCGAGTTTGTGACAGATGCTTGGCAGAAGTAACTCAGAGGCTGACTAATGCTAAAGAAGCAGCTAGTAAGCCTGCATTGCAGAGTCATGAGGATCTAGCCAAAAAGCTTCAGGATGAAATGGAAAGAAACCGCAAGTCATCAGGTTCCAGATCTGATGGTCCTGGGAAACGAATGAAGGAGGTTGCTTGCCCCACCTGCACTGTTCATTTGCAGAAAGCTATTGAATCTTTTGCCTTTTTTGGATTGGTTGCAGCTGATGCTTTATGTCTTGAGAGACTTGACGAAGTGCTTTATGAGAAGTCGCATTATTTGGCTGTGGGAGGAATACCTTGTTCATCGTGCTCTGTGATTTTCAGCATGAAATGTTGTTATTCTTTGTTATTTGTTTCTTCATTATGGGTTGCAATGTGCATGGCCATAGAAGGGCTGGTTAAGCTGCCAAGAAATGAAACAGTCCCTGCTGTTATCGTGTTTGGAGACTCCATTGTTGATACAGGCAACAACAACAATCTTCACTCTCTCGCTAAGTGCAATTTCCCTCCCTATGGCAGAGATTTCTTTGGTGCAATACCCACTGGGAGATTTTCCAATGGAAAGGTTCCGTCAGACTTCTTAGTTCAAGAACTCGGAATCAAAGAGCTACTACCTCCATACATGGATCCAAATCTGCGATCTATGGATCTTCTTACTGGCGTATGCTTTGCTTCAGGTGCTTCAGGCTATGATCCTTTGACCACAGCATTGTTGTCGGTCTCGTCATTATCTGAGCAATTGAAACAGTTCAAGGAATACATTTGGCGATTGAAAGAAATAGTTGGAGAAGAGAGAACAAGTTTCATACTGGCCAAAAGTGTAGTTGCCGTTATTTCAGGCAGTAATGACATTGGAAACACGTACTTTGCTCTGGGAATTAGAAGATTGGAGTACGATATCCCTGCTTACACTGATCTTATGCTCAACTCCGCCGCTTCTTTCCTCAAGGAATTATATAAACTGGGAGTGAGAAGAATAGGAGTGTTCAGTATTCCACCAATAGGATGTGTTCCAGCTTTAAGAACTCTAGGCGGAGGCCTTCTGAGACACTGTTTAGAAGAAGCAAACGAAGCCGCAAAGCTCTTCAACTCCAAACTTTCTTCTCAAATCCAGTTGCTGCACCAAAATCACCCCCCCGCCAAGATTGTCTATATCGACATTTATAACCCATTTCTCGATATCATCAAACACCCCAGAAAATTCGCAGGGTTTGAAGTTGTAAACAAAGGGTGCTGTGGAAGTGGGACATTGGAGGCATCAGTCCTGTGCAACGAGCTTGAACCAGAAACTTGCAGAGACGATAGCAAGTATGTGTTTTGGGATAGCTTTCATCCTACTGAAAGAGTCTACAAAATCCTTGTTCCTCAACTCCTCAATAAATACGTCAACAGCTTCTTGTGA 2895 44.84 MQQGDYSSAPYYQYPHLQNPNPIPNSTSTPPDLYQPTPFASAPPFSNNYAPIPSDYSAHPPNYSSYSQNSDHLSVSPTAPSFSPSSNPNFQPFNPTPQPSPFPPFESHVPFQSLPQQQSYYSPYDQHQASHNYAPSSSSLSADSVSNLALSSNSQYSSEQYAQFGSSVPPAYENPYENSGKFNQGSGYVDDKYGSYNQNKSGFGLDQYGKRMDNGVSRYESSYDDGYGDGVFAYQGGKVEPYGARGTAPNSSTWTGFDDYGRPISFPSGKEPSSGSSKIVRATPKADTQDDAKSGVQKFRVKLLAESGGQTTTDVLCQIGLDGIRMLDQNTGRTLRIYPLETITRCEVIESSTLAFWSKSSVDIEPRRIRLQSNSYTSNTLLDTVTAATVQFKEMGGRSRPPDSLKSSEQSIERKKGFGDWMSLMKPVNVEKDHWVPDEAVSKCTTCRTDFGAFVRKHHCRNCGDIFCDKCTQGRITLTSEENATLVRVCDRCLAEVTQRLTNAKEAASKPALQSHEDLAKKLQDEMERNRKSSGSRSDGPGKRMKEVACPTCTVHLQKAIESFAFFGLVAADALCLERLDEVLYEKSHYLAVGGIPCSSCSVIFSMKCCYSLLFVSSLWVAMCMAIEGLVKLPRNETVPAVIVFGDSIVDTGNNNNLHSLAKCNFPPYGRDFFGAIPTGRFSNGKVPSDFLVQELGIKELLPPYMDPNLRSMDLLTGVCFASGASGYDPLTTALLSVSSLSEQLKQFKEYIWRLKEIVGEERTSFILAKSVVAVISGSNDIGNTYFALGIRRLEYDIPAYTDLMLNSAASFLKELYKLGVRRIGVFSIPPIGCVPALRTLGGGLLRHCLEEANEAAKLFNSKLSSQIQLLHQNHPPAKIVYIDIYNPFLDIIKHPRKFAGFEVVNKGCCGSGTLEASVLCNELEPETCRDDSKYVFWDSFHPTERVYKILVPQLLNKYVNSFL 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55967121 55976006 + BLOR01608 Blo01g01608 56048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01608 964 Pfam GDSL-like Lipase/Acylhydrolase 642 951 IPR001087 GO:0016788
Blo01g01608 964 CDD SGNH_plant_lipase_like 640 959 IPR035669 -
Blo01g01608 964 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 438 498 IPR017455 -
Blo01g01608 964 SUPERFAMILY SGNH hydrolase 770 957 - -
Blo01g01608 964 PANTHER PROTEIN FREE1 1 562 - -
Blo01g01608 964 MobiDBLite consensus disorder prediction 524 544 - -
Blo01g01608 964 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 642 653 IPR008265 GO:0006629|GO:0016298
Blo01g01608 964 Coils Coil 513 533 - -
Blo01g01608 964 MobiDBLite consensus disorder prediction 1 23 - -
Blo01g01608 964 MobiDBLite consensus disorder prediction 90 108 - -
Blo01g01608 964 CDD PTB 300 346 - -
Blo01g01608 964 MobiDBLite consensus disorder prediction 1 146 - -
Blo01g01608 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 503 IPR013083 -
Blo01g01608 964 SUPERFAMILY FYVE/PHD zinc finger 433 502 IPR011011 -
Blo01g01608 964 Gene3D SGNH hydrolase 631 960 IPR036514 -
Blo01g01608 964 PANTHER PROTEIN FREE1 1 562 IPR045893 GO:0036258|GO:0043130
Blo01g01608 964 MobiDBLite consensus disorder prediction 262 292 - -
Blo01g01608 964 SMART fyve_4 430 499 IPR000306 GO:0046872
Blo01g01608 964 MobiDBLite consensus disorder prediction 110 146 - -
Blo01g01608 964 Pfam FYVE zinc finger 434 498 IPR000306 GO:0046872
Blo01g01608 964 MobiDBLite consensus disorder prediction 269 283 - -
Blo01g01608 964 MobiDBLite consensus disorder prediction 32 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01608 - - - csv:101213650 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01608 Blo-Chr1:55967121 Blo03g00608 Blo-Chr3:24742276 3.17E-104 dispersed
Blo16g00734 Blo-Chr16:28588783 Blo01g01608 Blo-Chr1:55967121 2.76E-50 dispersed
Blo01g01608 Blo-Chr1:55967121 Blo01g01609 Blo-Chr1:55988055 0 tandem
Blo04g01223 Blo-Chr4:23330388 Blo01g01608 Blo-Chr1:55967121 9.09E-64 transposed
Blo07g00885 Blo-Chr7:27613391 Blo01g01608 Blo-Chr1:55967121 1.82E-94 transposed
Blo16g00009 Blo-Chr16:511530 Blo01g01608 Blo-Chr1:55967121 4.17E-44 transposed
Blo01g01608 Blo-Chr1:55967121 Blo12g00878 Blo-Chr12:26978764 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1154 Blo01g01608 . . . . . . . Cmo05g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma05g00324 Car05g00271 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005990 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01608 Blo_Chr01 FPKM 11.54661 11.645778 11.015882 13.337922 4.84187 0.0 4.591611 22.077581 12.561879 19.791162