Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01615 ATGGCAAGGCTACTGTGTTTCTTCACGATGAATTACGTTTCTCAAGCCCCTTACGATTACCCAGCTCTCTTCAGCCACTGGAAGTCCGGCGAGGATGATTCTGTTGGCTTCTGCGATCTTTCTGGGGAAAAATTTTTCCGTAATGATCTTGAAGATAATCTGCGTGGAAAGACTGTTTGTGGGTCTTCTTTCGGTTGGTTGAAATTGGCTGATGAAGGTGATTCTCATACTCTAAGCTTGCTTAATCCTCTCACCCGAGACATCATTCAACTCGGACACATCCCAGCCTCGTTTGACGAAGAAGACGAGAGCATCGCCACTGACACCCCAAACCCGAATGATAACACATTCATTGTTTATAAAGCCGTACTCAATTCTGACCCAAATATTAACCCTCTTCGATATGTTGTTCTGGCTATCTACGGCAAGGAGAAGAAATTAATCTACTACAATTCGCCCCATTCCTCTTGGACAATGCTGAAGGACGGAGGAAGTTGCTTCGATGATATGATCTCAGAGAAAGAAGGGTTTTACGCCATCGACGAGTTCGGAAAGATTGTGCTCTGCAATCTCAACTTTTATCCAGTCGTCAGATTTTCACCCTCCGTCAAAGAAATTTATTTGCCGTGGTTCTTTAAGGGCAACAAGGTCTATCTCGTCCAAATCGAAGGACTGCTGTACACTATCATCAGATTTCTTCAGAGTAATCCAAAGGTGGGATACGAAACGTATTCTTTCGAAGTCTACGCCTATGATTCATCAATCGAAAAGTGGCTGCGAGTAGAATCCATCGGAAACATGGCTATTTTCTTGGGGATCAATCACTCAGTTTGTCTCCCAGTGAACCCCTGCAATTCTGAAAAGATGAAGCCAAACAGTATTTACTTCACCGACGATCAGGTGGAGAGTCGGGGCAGAAGGGGAATCGTCGGCCTGGACAGCGGAGTTTACGACCTGAAAGATTTCAATCCGGAAGGGGTGGGAGTGATGCCGACTAGGTACGAGGGTTTGGAGCCATGGGCAGTCTGGTACGACCGAAAACCTATCAACGCCTTGCAGGGTTCTAGGTCAGAGGGAGTGTCTTCGCAAGAGAGGGAGGCCGAGAAGGAGCTCGGTATTCCGAGCGAACAGGCGACTGGCAAGCTCCGACAGCTTCTGTTCGGGAGCATTTCGAGCAGACGACGAGCGAACGTTCGGTCGTCGGTGGCTGCGAGCGATCGAACGCAGGGGATGTCGAACGTGGACAGCGACAGGACCGCAACTGGGAGCCGTTCCGAAGAGGCAGCGCGGTCTGGACGGCAGGGCAAAATTGAGGAACGTCCTCCTCTGTCTCCTGATTTCGGCTCAGACGAGTTTGTGGATTTCGAGCTAGTACCTGAGGTTGTTGCTCCTTCGTATAAGAGGAAGGACTGTCAAAGAGTTCAAGCAAATCTTTCGTCCTCCATAGCAAGCCTACTCTGTTTCTTCACGATGAATTACGTTTCTCAAGCCCCCTACAATTACCCTTTTCTCTTCTGCCACTGGAAGTCCGGCGAGGATGATTCTGTTGGCTTCTGCGATCTTTCTGGGGAAAATTTTTGCCGTAATAATCTCGAAGATAATCTGCGAGGAAAGATTGTTTGTGGGTCTTCTTTCGGTTGGTTGATCTTGGCTGATGAAGGTGATTCTCCTACTCTAAGCTTGCTTGATCCTCTCACCCGAGCCATCATTCAACTCGGACCCATCCCAGCCTCGTTTGACGAAGAAGACGAGAGCATCGCCATTGATACCCCAAACCCTAATGATAACACGCGCATTGTTTATAAAGCCGTACTCAATTCTGACCCAAAGATTAACCCTCTTCGATATGTTGTTCTGGCTATCTACGGAAAGAAGAAGCAATTAATCTACTACAAACCGGCCCATTCTTCTTGGACAATGCTGAAGGACGGAGGAAGTTACTTCGATGATATAATATCAGAGAAAGAAGGGTTTTACGCTATCGACGAGTTCGGAAAGATTGTGCTCTGCAATCTCAACTTTTCTCCAGTCGTCGGATTTTCACCCTCCGTCAAAGAAATTTCTTTGCCGTGGTTCTTTAAGGGCGACAAGGTCTATCTCGTCCGAATCGGAGGACTGCTGTGCACTGTCATCAGATTTTTGCAGAGTAATCCAAAGGTGGGATACGAAACGTATTCTTTCGAAGTCTACACCTATGATTCATCAATCGAAAAGTGGCTGCGAGTAGGATCCATCGGAAACATGGCTATTTTCTTGGGGATCAATCACTCAGTTTGTCTCCCAGTCAACCCCAACAATTCTAAAAAGATGAAGCCAAACAGTATTTACTTCACCGACGATCAGGTGGAGATGCAGGGCAGAAGGGGAATCGTCGGCCTGGACAGCGGAGTTTACGACCTGAAAGATTTCAACCCGGAAGGGGAGGGAGGAATGCCAACTAGGTACGAGGATTTGGACCCATGGGCAGTCTGGTACGAGCCGATAAGCTATCAATGCCTTGCAAGGTTCAGACCGCCTCGTAGATTAGAATGTCACCGCCGGCGAGGAGCAAAGGCTGGAATGGGTCACCGGAGAAGCATTATCCTCCACCATTTGCCTCCCATGAAGAGGATTCCTGTGATTGGGGGGAAGGAGCTAGACCTGCATGTGTTATATTTGGAGGTAGTTGCAGAGAAAAAATGGAGGGAAGTGGGCAATATATTTAAATTCTCCCCTACAACAACAAGTGCTTCTTTTGTGTTGAGGAAACACTACTTCAGTCTTCTCTACCATTATGAACAGGTTTACTTCTTCGAGAGACAAGGCGTTCTGACTACTCCAAGAGGTTCCTCTTTCCACCCTAATACCCATTCAGCTGCATTCGCTTTTAGTGACCCTTCGTGCAGAAATGAGTTGGCCATTGTTGAGTACACTCCAAAGAAGACGAATTCGCCTGAACCAACTGCAGAAGATGGACCATGCTTGTCAGTTATTGGAACAATTGAAGGGAAGTTCGACTGTGGTTATTTTGTGTCTGCAAAAGTGGGTTCAGAGATTCTCAGAGGAGTGCTTTACCATCCAGAAGAGCCGTCTATGTTATCACCGCCCTCATTTCCACATGTCAACAATGTACAAGCGCTAGTTCCTTACAAATATGGCAGACAGTGCCATTCCGGTGGCCGGAGAAGGAAGAGGAGCCGGAGAAAGGGAGATCCAAACTACCCAAAACCTAACAGAAGTGGGTATAACTTCTTTTTCGCAGAAAAACATTACAAACTCAAGTCTCTGTATCCAAATAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAGCAATCTCAGCCCTGAAGAGAGAATGGTTTACCAAAACATAGGGTTGAAAGACAAGGAAAGATACAAGAGGGAATTGAAAGAGTACAAAGAGAAATTGAGGCTGACACTGGGAGTTAATGAATGA 3441 46.85 MARLLCFFTMNYVSQAPYDYPALFSHWKSGEDDSVGFCDLSGEKFFRNDLEDNLRGKTVCGSSFGWLKLADEGDSHTLSLLNPLTRDIIQLGHIPASFDEEDESIATDTPNPNDNTFIVYKAVLNSDPNINPLRYVVLAIYGKEKKLIYYNSPHSSWTMLKDGGSCFDDMISEKEGFYAIDEFGKIVLCNLNFYPVVRFSPSVKEIYLPWFFKGNKVYLVQIEGLLYTIIRFLQSNPKVGYETYSFEVYAYDSSIEKWLRVESIGNMAIFLGINHSVCLPVNPCNSEKMKPNSIYFTDDQVESRGRRGIVGLDSGVYDLKDFNPEGVGVMPTRYEGLEPWAVWYDRKPINALQGSRSEGVSSQEREAEKELGIPSEQATGKLRQLLFGSISSRRRANVRSSVAASDRTQGMSNVDSDRTATGSRSEEAARSGRQGKIEERPPLSPDFGSDEFVDFELVPEVVAPSYKRKDCQRVQANLSSSIASLLCFFTMNYVSQAPYNYPFLFCHWKSGEDDSVGFCDLSGENFCRNNLEDNLRGKIVCGSSFGWLILADEGDSPTLSLLDPLTRAIIQLGPIPASFDEEDESIAIDTPNPNDNTRIVYKAVLNSDPKINPLRYVVLAIYGKKKQLIYYKPAHSSWTMLKDGGSYFDDIISEKEGFYAIDEFGKIVLCNLNFSPVVGFSPSVKEISLPWFFKGDKVYLVRIGGLLCTVIRFLQSNPKVGYETYSFEVYTYDSSIEKWLRVGSIGNMAIFLGINHSVCLPVNPNNSKKMKPNSIYFTDDQVEMQGRRGIVGLDSGVYDLKDFNPEGEGGMPTRYEDLDPWAVWYEPISYQCLARFRPPRRLECHRRRGAKAGMGHRRSIILHHLPPMKRIPVIGGKELDLHVLYLEVVAEKKWREVGNIFKFSPTTTSASFVLRKHYFSLLYHYEQVYFFERQGVLTTPRGSSFHPNTHSAAFAFSDPSCRNELAIVEYTPKKTNSPEPTAEDGPCLSVIGTIEGKFDCGYFVSAKVGSEILRGVLYHPEEPSMLSPPSFPHVNNVQALVPYKYGRQCHSGGRRRKRSRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPEERMVYQNIGLKDKERYKRELKEYKEKLRLTLGVNE 1146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56045650 56056942 - BLOR01615 Blo01g01615 56055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01615 1146 MobiDBLite consensus disorder prediction 398 419 - -
Blo01g01615 1146 Pfam ARID/BRIGHT DNA binding domain 867 926 IPR001606 GO:0003677
Blo01g01615 1146 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 1068 1135 IPR009071 -
Blo01g01615 1146 MobiDBLite consensus disorder prediction 420 445 - -
Blo01g01615 1146 SMART bright_3 851 931 IPR001606 GO:0003677
Blo01g01615 1146 MobiDBLite consensus disorder prediction 1049 1071 - -
Blo01g01615 1146 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 870 1141 - -
Blo01g01615 1146 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 870 1141 - -
Blo01g01615 1146 MobiDBLite consensus disorder prediction 353 375 - -
Blo01g01615 1146 SMART hmgende2 1067 1136 IPR009071 -
Blo01g01615 1146 CDD HMGB-UBF_HMG-box 1068 1132 - -
Blo01g01615 1146 SMART ARID_2 834 926 - -
Blo01g01615 1146 Pfam HMG (high mobility group) box 1068 1135 IPR009071 -
Blo01g01615 1146 SUPERFAMILY ARID-like 867 939 IPR036431 GO:0003677
Blo01g01615 1146 MobiDBLite consensus disorder prediction 1049 1063 - -
Blo01g01615 1146 MobiDBLite consensus disorder prediction 398 448 - -
Blo01g01615 1146 Coils Coil 1124 1144 - -
Blo01g01615 1146 Pfam Protein of unknown function (DUF295) 741 800 IPR005174 -
Blo01g01615 1146 Pfam Protein of unknown function (DUF295) 260 319 IPR005174 -
Blo01g01615 1146 Gene3D - 861 937 IPR036431 GO:0003677
Blo01g01615 1146 SUPERFAMILY HMG-box 1065 1137 IPR036910 -
Blo01g01615 1146 Gene3D High mobility group box domain 1052 1141 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01615 - - - mcha:111011470 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00329 Blo-Chr1:3990205 Blo01g01615 Blo-Chr1:56045650 1.96E-63 dispersed
Blo01g01615 Blo-Chr1:56045650 Blo03g00216 Blo-Chr3:4920483 9.70E-17 dispersed
Blo01g01615 Blo-Chr1:56045650 Blo10g00890 Blo-Chr10:27877630 3.99E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g00329 . 27 364 ARID Transcription Factor Family AT1G04880 59.5 2.6e-100 362.8
Blo01g01615 . 871 1140 ARID Transcription Factor Family AT1G76110 61.0 1.6e-86 316.6
Blo10g00890 BCT 42 310 ARID Transcription Factor Family AT3G13350 52.3 2.9e-74 275.8
Blo07g00805 CCT,ECH 1 780 ARID Transcription Factor Family AT3G43240 54.8 8.9e-239 823.5
Blo06g00765 CCT,ECH 2 740 ARID Transcription Factor Family AT3G43240 55.8 1.2e-235 813.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11942 PF00505 HMG_box 4.70E-11 CL0114 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01615 Blo_Chr01 FPKM 69.202019 71.915894 96.413292 100.410637 58.755627 38.107563 48.95483 57.561031 51.498947 70.274147