Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01618 ATGGATGCACAGGTGAATAATATATTGAAAAATGAAGCCAGCGAAGAGAAAGGCGAGCTTGCGAGGATGGCATCATTTGTTGGTGCGATGGCAATTGCAGATTTAGTCAAAACAACCTTAGGCCCAAAAGGAATGGACAAAATTTTGCAATCTACTGGCAGAGGACGTTCTGTGACTGTCACAAATGATGGTGCCACCATTTTAAAGTCTCTTCATATTGACAACCCTGCTGCTAAAGTTCTAGTTGACATTTCAAAAGTTCAAGATGACGAAGTGGGTGATGGAACAACCTCTGTTGTTGTCTTGGCGGGAGAACTTTTAAGAGAGGCAGAGAAGCTGGTTGCAACTAAGATTCATCCAATGACAATCATATCAGGCTATAGAATGGCGGTAGAATGCGCACGCAATGCACTGTTGGAAAAAGTTGTTGATAACAAAGACAATTCAGAAATGTTCAAATCAGACTTGATGAGGATTGCAATGACTACCTTGAGCTCTAAAATTCTCTCACAGGACAAAGAACATTTTGCCACACTTGCTGTGGACGCTGTAATGAGGCTAAAGGGAAGCACAAACTTAGAGTCAATTCAAATCATAAAGAAGCCTGGAGGATCATTGAAGGATTCTTTTCTGGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGGCAACCCAAGCGCATTGAGAATGCAAATATTTTGGTGGCAAATACAGCAATGGACACTGATAAAGTCAAAATCTATGGTGCACGAGTTCGTGTTGATTCAATGGCAAAGGTTGCTGAGATTGAGGGAGCTGAGAAGGAAAAAATGAGGGAGAAGGTTCAAAAGATTATAGGTCATGGCATTAATTGCTTTGTTAATCGACAGTTGATCTATAATTTCCCAGAGGAGCTTTTTGCGGATGCGGGAATACTGGCTATTGAGCATGCTGATTTTGATGGTATTGAACGACTGGCTTTAGTAACTGGTGGTGAAATCGCTTCAACCTTTGACAATCCCGAATCTGTCAAACTTGGGCATTGCAAACTCATTGAGGAGATCATGATTGGTGAGGACAAGTTGATCCACTTTTCTGGCGTTGAAATGGGCCAGGCTTGTACAATAGTTTTAAGAGGAGCAAGCCATCACGTTCTTGATGAGGCAGAAAGGTCTCTGCATGATGCTTTGTGCGTGTTATCCCAAACAGTCATTGACAGTAGGGTTCTGCTTGGGGGTGGATGGCCCGAGATGATTATGGCTAAAGAAGTGGATGAGCTGGCTAGGAAGACTCCCGGCAAGAAATCACATGCTATTGAAGCTTTCTCAAAGGCGCTTTTAGCAATCCCCACCATCATTGCTGATAATGCTGGGCTGGACAGTGCTGAGTTAATTTCCCAGCTTCGTGCTGAACACCATAAGGAAGGTTGCACTGCCGGGATTGATGTCATCTCAGGATCTGTGGGAGACATGGCAGAGCGAGGAATCTCAGAAGCTTTTAAAGTGAAGCAAGCAATATTGCTATCTGCAACAGAGGCGGCGGAGATGATTCTTAGAGTTGATGAAATCATCACATGTGCTCCCCGGAAGAGAGAAGATAGAATAAACCTCGGCTCTAGCCTTTCCCGCTACTTAAACCCTCTCCCGGGGAAAAGGAAAAACCGGAGTCGCACTGGCATGGCCAACGAATGTGAAGCCATGCAATGTAGAGACGAGACTGAGAGTCGCCGCCTTGTTTCGGATCCCCGCGTCTCCTCTGTCGATGATTCCGTGCGCGTCCTTCGCGACATCGTTGAGGAACTCCCTTCTTACATCGCGAAGGACTTGTTAAACCTTGGGGTATGTATCCGATGCATCATCCGCCTCTGTGGTATTGAAGGTCATTTCACTTACTGTAATGACAAAGAAAAGTTGGTAAAAAATGAAGCGGCTGAGGATTTTGCTGTCTCAATTGCGGAGATGGCTAAGCAACAGGGATGTAAAATTGATAGTTTTTCTCTTGAAGTGTCAATTCCATCCATTGTCCTTCAAAATGAAGAGTCTGTATTGCAGCATTTGAAAAAAAAGTATGGATCTGATCCTTGGTTCACACAGAAGTCCCCTTTCCGTGTCCCAGTGAAAGATGCCTTAACGTTCTCTATAACAAAACCACTTGAGACTTTGTTGTACTCAAAATCTAATATAAGTGTATGTCGCTTGCGGTTGACATATAGTCATCAGAAATCATCCATGATTACTGATGATTCAATGGAACAGAACCGAGTTTGCAAGAAAATAAAAGCAGGCAAATTACTAATAATTTTTTGTTTATTGATTTTTACAGACACTGAAAATCTCTTTAACTCTATTGATAGTACTACTGCTACCAGTATCGAATCTTCTGGTAATTCAGCCAGTGAATTTTCTAACTCCTCCAAACCCTTTCCTGAAAAGATGAATGAACCGTTTCATCTGGCATTTGTTTGCTTGAGGACGCCAATCTACTTTGTTGGGAGATACCTGAAGTATTCAAGAAATGTGAGTCAGTCTCGATGGATAATTGATGATGAGAGAATGGGAGAAGCATCTGTAGAGGAAACGCTTGGTAGCAACATTCTTCATTCTTGCCTTGGTGATACTTACAAGTTTCATGCTGCTGGCAGGGAGGATATTGATGTACGGATGTTGGGTTCAGGTAGGCCTTTCCTGATCGAGATACACAATCCTTGTCTAGTGCCATCTGAGATAGGTGTAAAAGAAATTGAAATGAAGATAAACAACTTGGAAAAGAAATTGGTGGGCATAAAAAACCTAAAAATTGTGGGCCGTGAGGGCTGGGCCTTGATGCGGGAAGGGGAAGCAGAAAAGCAGAAACAATATGCTGCACTTGTGTGGATATCAAGATCTCTTGAAGACAAAGATAATCATTTGATATCTTCACTTAAGGACATGTTGGGCTTGTTAGTTATTCGTGGTATTTCAGAATCAAGGCACATCAGAGCTAGGGTATTTCAAAGCCGGAGTATTTCAGATCAAGTGTATAAGAGGCATGGTACTTTAGCGTTTGAGTATTTTAAAGCTTGGGTATTTCATATCCAAGGTATTTCAGAGCTAAGTTACATTCGAGTCAAGGAAATTTTGCAACGGACTCCAGTAAGAGTGCTTCACCGTCGAAGTCCATTAGATCGCAAAAAGATTATACATTGGATGAAAATTGAGAGGGTTGTTGGTAGTTCTCAGTATTTTCTGCTTCATCTGTGCACTCAGGCTGGGACATATATTAAGGAGTTTGTTCACGGAGATCTTGGTCGCACCCATCCTAGTGTTGGGTCTCTTCTTGGTTGCAGAGCCGAAATACTGCAACTCGATGTCACTGATGTAAATATGAGTTGCAATCTTGTTTAA 3366 42.31 MDAQVNNILKNEASEEKGELARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVATKIHPMTIISGYRMAVECARNALLEKVVDNKDNSEMFKSDLMRIAMTTLSSKILSQDKEHFATLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMDTDKVKIYGARVRVDSMAKVAEIEGAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVIDSRVLLGGGWPEMIMAKEVDELARKTPGKKSHAIEAFSKALLAIPTIIADNAGLDSAELISQLRAEHHKEGCTAGIDVISGSVGDMAERGISEAFKVKQAILLSATEAAEMILRVDEIITCAPRKREDRINLGSSLSRYLNPLPGKRKNRSRTGMANECEAMQCRDETESRRLVSDPRVSSVDDSVRVLRDIVEELPSYIAKDLLNLGVCIRCIIRLCGIEGHFTYCNDKEKLVKNEAAEDFAVSIAEMAKQQGCKIDSFSLEVSIPSIVLQNEESVLQHLKKKYGSDPWFTQKSPFRVPVKDALTFSITKPLETLLYSKSNISVCRLRLTYSHQKSSMITDDSMEQNRVCKKIKAGKLLIIFCLLIFTDTENLFNSIDSTTATSIESSGNSASEFSNSSKPFPEKMNEPFHLAFVCLRTPIYFVGRYLKYSRNVSQSRWIIDDERMGEASVEETLGSNILHSCLGDTYKFHAAGREDIDVRMLGSGRPFLIEIHNPCLVPSEIGVKEIEMKINNLEKKLVGIKNLKIVGREGWALMREGEAEKQKQYAALVWISRSLEDKDNHLISSLKDMLGLLVIRGISESRHIRARVFQSRSISDQVYKRHGTLAFEYFKAWVFHIQGISELSYIRVKEILQRTPVRVLHRRSPLDRKKIIHWMKIERVVGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSVGSLLGCRAEILQLDVTDVNMSCNLV 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56079624 56093609 - BLOR01618 Blo01g01618 56058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01618 1121 Gene3D - 144 401 IPR027410 -
Blo01g01618 1121 ProSitePatterns Chaperonins TCP-1 signature 1. 37 49 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Blo01g01618 1121 SUPERFAMILY Pseudouridine synthase 941 1115 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Blo01g01618 1121 PANTHER BNAA02G05110D PROTEIN 8 527 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Blo01g01618 1121 Pfam TCP-1/cpn60 chaperonin family 32 519 IPR002423 GO:0005524
Blo01g01618 1121 Gene3D - 594 638 - -
Blo01g01618 1121 Gene3D GroEL 213 365 IPR027409 -
Blo01g01618 1121 SUPERFAMILY GroEL apical domain-like 208 374 IPR027409 -
Blo01g01618 1121 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 7 525 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Blo01g01618 1121 CDD TCP1_beta 8 524 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Blo01g01618 1121 Gene3D - 820 944 - -
Blo01g01618 1121 Gene3D - 29 518 IPR027413 -
Blo01g01618 1121 ProSitePatterns Chaperonins TCP-1 signature 3. 88 96 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Blo01g01618 1121 PANTHER CHAPERONIN 8 527 IPR017998 GO:0140662
Blo01g01618 1121 SUPERFAMILY GroEL equatorial domain-like 16 521 IPR027413 -
Blo01g01618 1121 PRINTS Tailless complex polypeptide 1 (chaperone) signature 58 76 IPR017998 GO:0140662
Blo01g01618 1121 PRINTS Tailless complex polypeptide 1 (chaperone) signature 88 107 IPR017998 GO:0140662
Blo01g01618 1121 PRINTS Tailless complex polypeptide 1 (chaperone) signature 369 391 IPR017998 GO:0140662
Blo01g01618 1121 PRINTS Tailless complex polypeptide 1 (chaperone) signature 34 50 IPR017998 GO:0140662
Blo01g01618 1121 PRINTS Tailless complex polypeptide 1 (chaperone) signature 403 415 IPR017998 GO:0140662
Blo01g01618 1121 Gene3D - 1011 1115 - -
Blo01g01618 1121 SUPERFAMILY GroEL-intermediate domain like 152 400 IPR027410 -
Blo01g01618 1121 ProSitePatterns Chaperonins TCP-1 signature 2. 60 76 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Blo01g01618 1121 Coils Coil 905 925 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01618 K09494 CCT2; T-complex protein 1 subunit beta - zju:107422720 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01618 Blo-Chr1:56079624 Blo03g01411 Blo-Chr3:40684448 3.50E-86 dispersed
Blo02g00385 Blo-Chr2:4498250 Blo01g01618 Blo-Chr1:56079624 2.57E-35 dispersed
Blo01g01618 Blo-Chr1:56079624 Blo04g00835 Blo-Chr4:8967233 1.09E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01618 Blo_Chr01 FPKM 0.1878 0.402536 0.148865 0.242528 0.0 0.0 0.092086 0.487122 0.320785 0.245382