Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01626 ATGCAAATTGTTGAAGCACTTAGCTTGGGTGAGAGAAGCAGAGCTTCCAATTTACTTTTGGATCTTGGCCAAGGAAATTGTTCTTTAACTGCCAGTGATTTCTTATATATTCTCAGATATTGTGCAACAGCACCCGATCCAGTGTTTGTCATGGAGACTTGGAGGATAATGGAAGGAAAGAAGGTTTGTCTGGATAACACGTGCTCCTTGCTCATGATAAAAGCACTCTGCGAAGGTGGTTGTTTGGATGAGGCATTGGGGTTGATTAATTTTCTCAGAGAAAGCCATGGAAACTATTCTATTCTTACATTGTACAATTTTTTTCTAAGAGCCTGTTCTAAATTGCAAAGCTCAAGTCATACCAATCAATGTTTGGGTCTGATGGAGCAGAACATGGTGGGGAAAAATGAAGCGACGTACGTTGAGCTTCTGAAGGTTGCAGTTTGGCAACAAAACCTATCTGCTGTCCATCATATCTGGGAGGACTATATAAAAAATTACAGTCTGAACATTTTACCTCTGCGGAAATTTATTCATTCTTTTGCAAGGTTGGGAGATTTAAAATCTGCATATGAAAAATTGCAACAGATGGTAGCTTTAGCCATCCGGGGAAGTACCTATGTTCATAAAACTGCAAAAGGGAAGCTTTATTCGACAAGAATAGACATTCCTCTACCTTTAAGAAGTAATTTTCCCTCCAAATTAGATTTCAATGAGAACATTTATTCTGCTCCTGCTTCGTCAAGTGAGAAACCAGGTGCCCTTGCCAGTGACGTAGTCCTATCGAACATTTCTGGCTTGACAAATGGAGGGAATGTGAATGGTGGATTAGGTTATATGAATAGGTGTAACAGCAGTGCTATGAAGGTTTTAAGGTGGTCTTTTAGTGATGTGATACATGCATCTGCACATGAGAAAAACTGTAGTCTAGCAAAGCAGTTATTACTACAGATGGAAAATCTTGGCCTGCAACCTTCAAGTCATACTTACGATGGTATTCTTAAAGCAGTTATTTCAGAGGGAAGTTTCAGTGACGGAATTGATGTGCTGAAAAAAATGCAACAGAGGAACTTGAAACCATATGATTCAACTCTTGCAACGCTTTCAATTTGTTGCAGTGAAGTTCTTGAGTTAGATTTGGCTGAAGCTTTACTGGAACAAGTTTTTCATTGCCCATATCCGCATCCTTTTAACAAATTTCTTGCCGCATGTGACATGATGGACCAACCAGAACGTGCTATCCAGATATTAACCAAAATGAATGAGTTGAAACTTCAGCCAGATATCAGGACATATGAGCTCCTGTTTTCACTATTTGGTAATGTGAATGTACCTTATGAGAGGGCAGATTTGTTATCACAGGCAGATTCCTCCAAAAGAATAAGTGCAATAGAGATGGACATGGTGAGGAATGGACATCAGCATAGTCATTTATCTATGAAGAACTTGTTAAAAGCTGTTGGACGCGAGGGCATGATAAGAAAGCAGCTTCAGTATTTGCATGTGGCAAAGAACCTTTTCTGTCGTAATAATACTTATTTGGGAATACCTATTTATAACGTAGTGTTGCATTCGTTAGTTAAAGCCAATGAAAGTGACAAGGCTCTAGAGATCTTTGAAGAGTTGATGTTTAGTGGTTCCCTCCCGGACACAACAACTTATAATATAATGATAGATTGTTGTAGCATTATGCAATGCTTTAAATCTGCATGTGCACTGCTTTCCATAATGGTCCGCAGAGGATTTTGTCCAGAAATGTCAACTTACACAGGCTTACTAAAGATTGTGTTAGATGACAACAATTTTAAAGAAGCATTTAATATTATGGATCGAGCTTGTTCTGAAGAGAGAGAACTTGATGTTCTGTTGTTTAATACTATCCTGAAAAAAGCTACTGAAAAGGGGAGGATTGATATAATTGAGTTCATCGTGGAAAAAATGCACCGTTGTAAAGTACAGCCCGATTGGTCAACCTGCTCTTGTGTTTTCTCTGCATACATAGAACATGGTTTTCACAACACTGCTGTGGAAGCATTGCAAGTTTTGAGCATGCGAATGCTATGTAGAGAAGATGGCATTATTCCAGACATGATGGATTATGACGATATCATTTTAGACGAAGGCAATGAATCTGAGACACAGATTTTGAAAATTTTTAAAGATGGAGGTGAGAATCTTGCTGTGGCTCTTTTAAATTTAAGGTGGTCGGCAATGCTTGGATTCTCAGTTTCACAGGACCCAAATGAAAGCCCTTGGTCAAAAAGACTCTCGCAATCATTTGATATCGAAGATCATTCAACTTTAGAGAATTTATAA 2316 38.56 MQIVEALSLGERSRASNLLLDLGQGNCSLTASDFLYILRYCATAPDPVFVMETWRIMEGKKVCLDNTCSLLMIKALCEGGCLDEALGLINFLRESHGNYSILTLYNFFLRACSKLQSSSHTNQCLGLMEQNMVGKNEATYVELLKVAVWQQNLSAVHHIWEDYIKNYSLNILPLRKFIHSFARLGDLKSAYEKLQQMVALAIRGSTYVHKTAKGKLYSTRIDIPLPLRSNFPSKLDFNENIYSAPASSSEKPGALASDVVLSNISGLTNGGNVNGGLGYMNRCNSSAMKVLRWSFSDVIHASAHEKNCSLAKQLLLQMENLGLQPSSHTYDGILKAVISEGSFSDGIDVLKKMQQRNLKPYDSTLATLSICCSEVLELDLAEALLEQVFHCPYPHPFNKFLAACDMMDQPERAIQILTKMNELKLQPDIRTYELLFSLFGNVNVPYERADLLSQADSSKRISAIEMDMVRNGHQHSHLSMKNLLKAVGREGMIRKQLQYLHVAKNLFCRNNTYLGIPIYNVVLHSLVKANESDKALEIFEELMFSGSLPDTTTYNIMIDCCSIMQCFKSACALLSIMVRRGFCPEMSTYTGLLKIVLDDNNFKEAFNIMDRACSEERELDVLLFNTILKKATEKGRIDIIEFIVEKMHRCKVQPDWSTCSCVFSAYIEHGFHNTAVEALQVLSMRMLCREDGIIPDMMDYDDIILDEGNESETQILKIFKDGGENLAVALLNLRWSAMLGFSVSQDPNESPWSKRLSQSFDIEDHSTLENL 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56139522 56146300 - BLOR01626 Blo01g01626 56066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01626 771 TIGRFAM PPR: pentatricopeptide repeat domain 518 551 IPR002885 -
Blo01g01626 771 TIGRFAM PPR: pentatricopeptide repeat domain 553 584 IPR002885 -
Blo01g01626 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Blo01g01626 771 Pfam PPR repeat family 518 561 IPR002885 -
Blo01g01626 771 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 762 - -
Blo01g01626 771 Pfam PPR repeat 72 94 IPR002885 -
Blo01g01626 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Blo01g01626 771 Pfam Pentatricopeptide repeat domain 295 337 IPR002885 -
Blo01g01626 771 Pfam Pentatricopeptide repeat domain 397 441 IPR002885 -
Blo01g01626 771 Gene3D Tetratricopeptide repeat domain 512 621 IPR011990 GO:0005515
Blo01g01626 771 Gene3D Tetratricopeptide repeat domain 243 391 IPR011990 GO:0005515
Blo01g01626 771 Gene3D Tetratricopeptide repeat domain 2 167 IPR011990 GO:0005515
Blo01g01626 771 Gene3D Tetratricopeptide repeat domain 392 511 IPR011990 GO:0005515
Blo01g01626 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01626 - - - jre:108996560 951.044
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01626 Blo-Chr1:56139522 Blo17g00620 Blo-Chr17:13041538 4.03E-08 dispersed
Blo01g01626 Blo-Chr1:56139522 Blo17g00710 Blo-Chr17:20191155 2.50E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g114 Blo01g01626 . . . Bpe02g00316 . . Bma01g02401 . . . . . . . Cpe06g00028 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00963 . . . . . . . Cmo09g00062 . . . Car09g00053 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005329 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01626 Blo_Chr01 FPKM 0.0 0.0 0.110702 0.1559 0.236061 0.131464 0.305084 1.080595 0.841994 0.816195