Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01631 ATGCATGCAGGTGATGATCACAGACTAAAAGAAGAGCTGATCATTCTTGCAATTTCAAAACTGGGTCTGAATTTCTCTGTTCAATCACCAACTTTGTCTCCAAGAATGGAAGGGATTCGATGCTCTGCAAACTATGTACCACTCACCCCAATCAGCTTCCTGGAGCGATCAGCTCTGGCTTATGGAGACAGATGCTCTGTTGTTTATGGAAATGTCCGTTTCACTTGGAAACAAACGCTTGATCGATGCACCAGACTGGCTTCTGCTCTTGTTCGACTAGGAGTGTCTTGCGGCGATGTTGTTGCTGCATTGTCCCCAAATGTTCCAGCGCTGTACGAGCTTCACTTTGGTGTTTCAATGGCGGGTGCAGTTGTTTGTGCACTCAACACAACTTTTGCTTCGACATTGATATCAGAACTCCTAACTCAATCAGACGCTAAAGTACTTTTCGTGGATTACCAGTTCTTCCATATTGCTAAGGAGGCCCTTGAAATTCTGTCCAACACGCAGGCAAAGCTACCAATTCTTGTCCTCATTGCAGAGCTCGATCAGACTTTCATCAACACCCAGGAGATTGAGTCCTCTTCTTCAATGCTTGAATATGAAACTCTTTTAGTCAGTGGCGAAGCTGGTTTTGAGATCAGACGCCCTAAAGATGAGTGGGATCCAATTTCACTCAATTTCACCTCAGGCACTACGTCCAGACCAAAAGGTGTTATATACAGCCATAGGGGTGCGTATCTCAATTCTCTAGCCGCCATTCTTCTCAGTGACATGGCCTCAGGGCCTGTCTATCTATGGTCTGTGCCTATGTTTCACTGCAGTGGGTGGTGTTTCACGTGGGCCATCGCTGCTCAGGGTGGCACGAACATCTGTCAAAGAAGCACAACGGCGGAAGAGATATTTGATACCATCTCTCACCATAAGGTGACCCATATGGGAGGAGCGCCCTCTGTACTGAACATGCTTATAAACGTACCAGCTAACGAGAGAACCCCACTTCCCGGAAAGGTAACGGTGATGACCGGCGGTGCACCGCCGCCACCTCACGTACTTCATCAAATTGGAAAACTGGGATTTAAGGTGACGCACTGTTATGGTTCCACAGAAACCTACGGGCCAGCCACCGCCTGCGAGTGGAAACCTGAATGGGCTTCACTGCCCCTCGACGAAAAGCTAAAATTTAGCGCCCGGCAGGGATTGCGGCATCTGGCCATGGAGGAAGTTGACGTAAAGGATCCAGTGATTCTTGAGGCAGCTGTCGTGGGAAGACTTGACGATCATTTGGGGGAGGCGCCATGCGCGTTCGTAAAACTGAAAGATGGCGTTGCTGTAAGTGAAGAAGACATAATCAAGTTCTGCGGGGAACAGTTGCCCCATTATATGGCTCCTCCAACAATCGTCTTCGCAGATTTACCAAAAACTTCAACTGGGAAGACTCAAAAGTACGTTCTGAAGGAGAAGGCAAAAGCCATGGCCAGGCTAGCATCTAAGTAA 1497 48.16 MHAGDDHRLKEELIILAISKLGLNFSVQSPTLSPRMEGIRCSANYVPLTPISFLERSALAYGDRCSVVYGNVRFTWKQTLDRCTRLASALVRLGVSCGDVVAALSPNVPALYELHFGVSMAGAVVCALNTTFASTLISELLTQSDAKVLFVDYQFFHIAKEALEILSNTQAKLPILVLIAELDQTFINTQEIESSSSMLEYETLLVSGEAGFEIRRPKDEWDPISLNFTSGTTSRPKGVIYSHRGAYLNSLAAILLSDMASGPVYLWSVPMFHCSGWCFTWAIAAQGGTNICQRSTTAEEIFDTISHHKVTHMGGAPSVLNMLINVPANERTPLPGKVTVMTGGAPPPPHVLHQIGKLGFKVTHCYGSTETYGPATACEWKPEWASLPLDEKLKFSARQGLRHLAMEEVDVKDPVILEAAVVGRLDDHLGEAPCAFVKLKDGVAVSEEDIIKFCGEQLPHYMAPPTIVFADLPKTSTGKTQKYVLKEKAKAMARLASK 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56166834 56168694 - BLOR01631 Blo01g01631 56071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01631 498 ProSitePatterns Putative AMP-binding domain signature. 226 237 IPR020845 -
Blo01g01631 498 PANTHER ACYL-ACTIVATING ENZYME 2-RELATED 38 415 - -
Blo01g01631 498 Pfam AMP-binding enzyme 55 414 IPR000873 -
Blo01g01631 498 Gene3D - 409 497 IPR045851 -
Blo01g01631 498 PANTHER ACYL-ACTIVATING ENZYME 2-RELATED 414 494 - -
Blo01g01631 498 SUPERFAMILY Acetyl-CoA synthetase-like 44 489 - -
Blo01g01631 498 PANTHER ACYL-ACTIVATING ENZYME 38 415 - -
Blo01g01631 498 Pfam AMP-binding enzyme C-terminal domain 406 479 IPR025110 -
Blo01g01631 498 Gene3D - 50 408 IPR042099 -
Blo01g01631 498 PANTHER ACYL-ACTIVATING ENZYME 414 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01631 - - - jre:109002926 553.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01631 Blo-Chr1:56166834 Blo16g00103 Blo-Chr16:2419968 4.17E-24 dispersed
Blo01g01631 Blo-Chr1:56166834 Blo12g00857 Blo-Chr12:26829473 2.15E-36 wgd
Blo01g01631 Blo-Chr1:56166834 Blo16g00100 Blo-Chr16:2411820 1.27E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g106 Blo01g01631 . . Bda03g00315 Bpe02g00313 Bpe04g00277 Bma04g00284 Bma01g02405 Cmo04g02558 . Cma01g02009 Cma09g00061 . . . . . . . . . . . . . . . . . . . Cone4ag2014 Cone7ag1930 . . Lsi04g01800 Csa04g02694 . . . . . . . . . . . . . . . . . . Cpe02g00040 . . . . . . . . . . . . . . . . Chy07g00385 Cme07g00062
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000842 5 8 4 3 3 1 3 2 1 3 2 2 2 3 3 1 1 2 2 2 3 3 3 3 3 3 4 5 3 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01631 Blo_Chr01 FPKM 12.122146 12.833652 15.597507 15.148577 11.959691 13.50867 11.950808 12.479093 13.991261 14.35753