Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01637 ATGGACGATGGAATCTTTTCGCCGGCTGCGATGCTGGGTGCTCCTTCTGATTCAGCGATGGATCTTGATTACATGGATGAACTGTTGTTAGAAGGTTGCTGGTTGGAAGCGACTGATGGATCTGAATTTCTTAGTCAGACTCCTCCATTATCATCTACCCCTTTCGACCCTTCTTCGTCTGCATGGTCGGCTCTGGTCATTAATGGCGATGTAAGCACAGTCCCGCTTCCCAATAGTGATCAAAACCTTTTCAACGAAACGGGAAAACTCTCAGTCCCGACTGCCAATCAAAATAAAATTGACGATTTCGACAATGAACTGCGAAGACGATGGTGGATTGCTCCAGGCCCTACATCTTCTGTTAGAGAGAGATTAATGAAGGCAGTTGGATATATCAAAGATTATGTGAGAGATAAAGATGTTCTTATACAAGTTTGGGTGCCAGTAAATACAGAGGGAAGAATGGTTCTTACAACGACTGGCCTGCCATATTCAGTGAGTACAAGCTGCTCAAGACTTTCTGAATATGGGGACATTTCAATGAAATATCAGTTCTCAGCAGAGAAGGATTCTAAGGATGTGGTCGGATTGCCAAGCCGAGTATTTATCCAGAAGGTTCCGGAATGGAGCCCCGATGTCACATTCTTCCGGAGCGATGAGTATCCGAGAGTTTCTTTCGCTCAAAAGTGCGATGTGCGAGGAACTTTAGCCCTTCCTGTCTTCGAACAAGGCAACAAGTCTTGCTTGGGCGTCATTGAAGTTGTCATGACTTCTCGCCAGATCAAGTATGGTCAGGACCTTGAAAGTGTTTGCAAAGCTCTGGAGGCTGTTGATCTTCGGAGTTCTGATGCTTTAGGCTCTCCGAATGTGAAGGTATTCTATAATTCTAACCAGGATTTATTGCTCGAGATTCTTGAAATTTTGACATTTGCATGTAAAACTCATGGATTGCCCTTGGCTCAAACTTGGGCGTCTTGTGTTCAACAAGGTAGAGAAGGTTGTCGCCATTCAGACGAGAATTACATTCTCTGCGTATCTACTGTTGATCAGGCCTGCTTTGTGGCAGACCGGAGAGTCGAACCTTTCCACGAGGCTTGCTCAGAATGTCATTTACTCAAAGGAGAAGGTGTCGTTGGGGAAGCATTCACGACAAATAAACCTTGCTTCTTGAGTGACATTAAGTCGTATGGCAACACTGAATATCCTCTATCTCACCACGCGAGGATGTTCGATTTGCAGGCTGCTGTTGCAATCCGGCTTCGAAGTATTCACGCTAGGAAAGCCGACTTTGTTCTTGAGTTCCTCTTGCCTATTTCTTGCACAGATCCTGAAGAACAGAAGAAGATTCTTCTTTCCTTGTCCATCATTGTACGACATTGTAGCCGGAACTTACGGGTTCTTACAGACAAAGAGCTCAAGGAGGAAGGTTGTTATCCCTTTAATGTGGGAGTTGCTTCAGATGGTAAGGCTAGGATACAAGAAATTCCACCGGTCCAACTTTACGATAATGCTGTCTCGATATTCAGTCAGGACACTGGAAGAGAAATTGTGGAGGAAAAGTCATCTGGGCATAGACATAACCAGCAAGATTCTAGTCTAAAAGTGGCTGTTGAGGGTATTGAGGAGTGTTTAAATTTTGGCGAGGGTAGCTCGTCGACCTTGGGCATCGGAAAGACGGGAGAGAAAAGGCGTACTAAGGCAGAGAAAGCGATCACCTTACAAGTACTCCGGCAATATTTTGCTGGTAGCTTAAAAGATGCAGCAAAGAGCATTGGAGTTTGTCCAACGACATTGAAAAGAATATGCCGACAACATGGGATTAAACGATGGCCTTCGAGGAAAATCAAGAAGGTCGGTCACTCACTGCAGAAACTCAAACGAGTGATCGATTCGGTAGAAGGTGGATCCGGCGCTTTTCAACTTGGTACCTTATATTCTAATTTTCCAGAGCTGGCCTCGCCAAATGTATCGAGAACGTCACCATTTTTAGCTTCGAAAATGAATGATTGTCCAAAGACATCTCCCATCCAGCAGGAAGGCAGCATTGCCAACATCCAAGCTGTTGCCTCAAAATCCCCCTCGTCTTCATGCAGCCAGGGGTCCAGTTCGAGCCTTAGTTGTTCGAGCCGAAGCCACCAATTTCCGCCTCCTTCGAACGATGCCGGAACTGAAGATCCTAATACAGAAGAAAATGTGGGTAATGGTGAGCTGAAAAGGGTCAAAAGTGAAGCAGAGCTCCATGTCTCTAGCGGAGAGGGAATAGATTTTCCAAGATCACAAAGCTTCAGAGGTCTGAGTGAGCATCTGGGCAATGAGACTATGCAACGTGAGGCAAAAGACAATGGAAGAACATCTGAAGAAGAAGATTCGTTGAGGGTCAAAGTCACCTACGGGGACGAGAAAATCCGGTTACGAATGCATAAGAATCAAGGATACCAAGATTTACTCAACGCAATCAGTAGTCGATTTCAGATCATGGACATGAGCAAGCTTGATCTGAAGTATTTGGATGACGATTCAGAGTGGGTCCTACTTACATGTGACGCTGATTTGGAGGAATGCATGGATGTATATAGACAATCTCGCTCTCAGGGCGGGACGATCAAGCTTTCCCTTCAGCTTGCTCGGGTGGAACTTGGGAAGTTTGTGTTCAGTTTTATGAGTCATCCAACTACGCGTCAGGTTTCTAATGTGTCTGCGAGAGTCAGGGGATTCGCCATGAAAGGGGGTAAATCGAAGTCGGAGTCGAAGAGAGCTGAACCGAAGCTGGCTGTGAATAAGAAAGCAGCGTCAAAACCAGCGAGGAAACCGAGTAAAAAAGCAGCAAAAGATCCAGACAAGCCTAAGAGGCCCGCCAGTGCCTTCTTTGTGTTCATGGAAGAATTTAGGAAGAAGTTCAATGAGGAGAACCCGAATAACAAAGCAGTGTCAGCCGTTGGAAAAGCTGCTGGACAGAAATGGAAGTCCATGTCTGAGGCTGACAAAGCACCTTATGTAGCAAAGGCAGAGAAACGAAAAGCTGATTATGAAAAAGAAATGAAGGCCTATAACAAGAAGCAGGCGGCTGGCCCCAAGTCTGTTGAGGAGGATGAATCTGAGAAATCAATGTCCGAGGTGAATGACGATGATGATGGAGAAGATGGCAGTGAAGAGGATGAGGATGACGATGATGATTAG 3177 45.61 MDDGIFSPAAMLGAPSDSAMDLDYMDELLLEGCWLEATDGSEFLSQTPPLSSTPFDPSSSAWSALVINGDVSTVPLPNSDQNLFNETGKLSVPTANQNKIDDFDNELRRRWWIAPGPTSSVRERLMKAVGYIKDYVRDKDVLIQVWVPVNTEGRMVLTTTGLPYSVSTSCSRLSEYGDISMKYQFSAEKDSKDVVGLPSRVFIQKVPEWSPDVTFFRSDEYPRVSFAQKCDVRGTLALPVFEQGNKSCLGVIEVVMTSRQIKYGQDLESVCKALEAVDLRSSDALGSPNVKVFYNSNQDLLLEILEILTFACKTHGLPLAQTWASCVQQGREGCRHSDENYILCVSTVDQACFVADRRVEPFHEACSECHLLKGEGVVGEAFTTNKPCFLSDIKSYGNTEYPLSHHARMFDLQAAVAIRLRSIHARKADFVLEFLLPISCTDPEEQKKILLSLSIIVRHCSRNLRVLTDKELKEEGCYPFNVGVASDGKARIQEIPPVQLYDNAVSIFSQDTGREIVEEKSSGHRHNQQDSSLKVAVEGIEECLNFGEGSSSTLGIGKTGEKRRTKAEKAITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLQKLKRVIDSVEGGSGAFQLGTLYSNFPELASPNVSRTSPFLASKMNDCPKTSPIQQEGSIANIQAVASKSPSSSCSQGSSSSLSCSSRSHQFPPPSNDAGTEDPNTEENVGNGELKRVKSEAELHVSSGEGIDFPRSQSFRGLSEHLGNETMQREAKDNGRTSEEEDSLRVKVTYGDEKIRLRMHKNQGYQDLLNAISSRFQIMDMSKLDLKYLDDDSEWVLLTCDADLEECMDVYRQSRSQGGTIKLSLQLARVELGKFVFSFMSHPTTRQVSNVSARVRGFAMKGGKSKSESKRAEPKLAVNKKAASKPARKPSKKAAKDPDKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKAEKRKADYEKEMKAYNKKQAAGPKSVEEDESEKSMSEVNDDDDGEDGSEEDEDDDDD 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56197879 56205282 + BLOR01637 Blo01g01637 56077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01637 1058 Pfam RWP-RK domain 571 618 IPR003035 -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 691 790 - -
Blo01g01637 1058 ProSiteProfiles PB1 domain profile. 790 875 IPR000270 GO:0005515
Blo01g01637 1058 MobiDBLite consensus disorder prediction 908 925 - -
Blo01g01637 1058 CDD PB1_NLP 791 873 IPR034891 -
Blo01g01637 1058 Pfam PB1 domain 791 873 IPR000270 GO:0005515
Blo01g01637 1058 CDD HMGB-UBF_HMG-box 948 1014 - -
Blo01g01637 1058 Gene3D - 786 871 - -
Blo01g01637 1058 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 948 1017 IPR009071 -
Blo01g01637 1058 Pfam HMG (high mobility group) box 948 1017 IPR009071 -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 997 1033 - -
Blo01g01637 1058 SUPERFAMILY HMG-box 934 1021 IPR036910 -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 691 730 - -
Blo01g01637 1058 SUPERFAMILY CAD & PB1 domains 783 873 - -
Blo01g01637 1058 PANTHER PROTEIN NLP4 17 879 - -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 976 1058 - -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 1034 1058 - -
Blo01g01637 1058 Coils Coil 999 1019 - -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 907 950 - -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 770 790 - -
Blo01g01637 1058 MobiDBLite consensus disorder prediction 731 748 - -
Blo01g01637 1058 ProSiteProfiles RWP-RK domain profile. 557 638 IPR003035 -
Blo01g01637 1058 SMART hmgende2 947 1018 IPR009071 -
Blo01g01637 1058 SMART PB1_new 790 875 IPR000270 GO:0005515
Blo01g01637 1058 PANTHER PROTEIN NLP8 17 879 IPR045012 GO:0003700
Blo01g01637 1058 Gene3D High mobility group box domain 932 1029 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01637 - - - bhj:120085671 944.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01637 Blo17g00903 CCT
Blo01g01637 Blo17g00903 ECH
Blo01g01637 Blo12g00853 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01637 Blo-Chr1:56197879 Blo03g00261 Blo-Chr3:5488587 2.23E-12 dispersed
Blo02g01141 Blo-Chr2:42830702 Blo01g01637 Blo-Chr1:56197879 3.65E-08 transposed
Blo04g00434 Blo-Chr4:3588640 Blo01g01637 Blo-Chr1:56197879 8.79E-18 transposed
Blo05g00676 Blo-Chr5:22241159 Blo01g01637 Blo-Chr1:56197879 1.11E-39 transposed
Blo07g01144 Blo-Chr7:31285101 Blo01g01637 Blo-Chr1:56197879 2.19E-37 transposed
Blo09g00273 Blo-Chr9:11838820 Blo01g01637 Blo-Chr1:56197879 4.52E-32 transposed
Blo11g00687 Blo-Chr11:7913208 Blo01g01637 Blo-Chr1:56197879 3.35E-12 transposed
Blo12g00853 Blo-Chr12:26805869 Blo01g01637 Blo-Chr1:56197879 0 transposed
Blo17g00903 Blo-Chr17:29779574 Blo01g01637 Blo-Chr1:56197879 0 transposed
Blo01g01637 Blo-Chr1:56197879 Blo12g00851 Blo-Chr12:26791293 8.22E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11943 PF00564 PB1 6.50E-19 CL0072 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01637 Blo_Chr01 FPKM 8.73852 9.130613 16.220718 17.154825 10.453701 11.035113 10.912315 17.660761 16.295618 18.746864