Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01638 ATGGAGTGGCAGAATCAGCAGCAAAACCAAGCAGAGCAACTGCCAATGCAAATGCCAAGTGATCAATTGCAGAACCCAGATGGGTTGTACGTCAAAGTGATGACGGACGAGCAAATGGAGCTTCTCCGGCGACAGATCTCCGTCTACGCTACCATTTGTGAGCAGCTTGTCGAGATGCACAAGGCGATGACTGCCCAACAGGACCTAACAGGAATGAGGTTGGGGAATCTCTATTGTGATCCAATGATGGCATCTAGCGGCCACAAGATTACTGCTCGACAAAGGTGGACTCCAACTCCCGTGCAGCTTCAAATGCTGGAGCGTATTTTTGACGAAGGAAATGGCACCCCAAGCAAGCAGAAGATTAGAGAGATAACTGTGGAGCTCTCACAACACGGCCAAATCTCTGAAGCGAATGTGTATAATTGGTTCCAAAACAGAAGAGCTCGTTCGAAAAGAAAGCAGTCTGTTTCGATCCAAAACAACGCAGATTCAGAAGTTGAAACTGAAGTCGAGTCTCCAAAGGAAGAGAAGACGAAGCTGGTAGGCGTCCGATCGTTCGAGAATCTCGGACAGAGGATGGGTGATGTTTATAACGAGGAATCGGAAATAAATGCCAAAATGCAGTACTTGGATGCACAATTCAATAAAGGGGAGCCCATTTTTCACTTCAGATCTTGTAATTCAGGCCATATGAGTGCCGTGCCGAATCAAAGGACCGATCTGACGATCAACAAATTGGAAATTCCGGGGAGTTATAGCTCCTACAATCCTTGTGAAGGGACCAATATGACTCATTATAACCTCTGCAATTTTGCACTCCTATTGGAAGATGATTGTATTTCTGGTATCATGCTTTCGCCGTTGGCTGGTATGTATTTTTCAGAGTCTGCAGTATCGAGTTCTTGGGTTCTTGGATGCGTTCATCCGAACACTTTTTCCATTCATAGATCGAAATTCATCAAACTGTTCGATAGATTTTCTCATCCACTTTGA 996 45.18 MEWQNQQQNQAEQLPMQMPSDQLQNPDGLYVKVMTDEQMELLRRQISVYATICEQLVEMHKAMTAQQDLTGMRLGNLYCDPMMASSGHKITARQRWTPTPVQLQMLERIFDEGNGTPSKQKIREITVELSQHGQISEANVYNWFQNRRARSKRKQSVSIQNNADSEVETEVESPKEEKTKLVGVRSFENLGQRMGDVYNEESEINAKMQYLDAQFNKGEPIFHFRSCNSGHMSAVPNQRTDLTINKLEIPGSYSSYNPCEGTNMTHYNLCNFALLLEDDCISGIMLSPLAGMYFSESAVSSSWVLGCVHPNTFSIHRSKFIKLFDRFSHPL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56208171 56210238 + BLOR01638 Blo01g01638 56078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01638 331 Pfam Homeodomain 93 153 IPR001356 GO:0003677
Blo01g01638 331 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 263 IPR044559 GO:0003700
Blo01g01638 331 SMART HOX_1 91 158 IPR001356 GO:0003677
Blo01g01638 331 MobiDBLite consensus disorder prediction 152 174 - -
Blo01g01638 331 MobiDBLite consensus disorder prediction 1 20 - -
Blo01g01638 331 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
Blo01g01638 331 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Blo01g01638 331 Gene3D - 95 159 - -
Blo01g01638 331 PANTHER - 1 263 - -
Blo01g01638 331 CDD homeodomain 93 155 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01638 - - - bhj:120085747 339.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01638 Blo-Chr1:56208171 Blo14g00416 Blo-Chr14:4650611 1.84E-14 dispersed
Blo07g01201 Blo-Chr7:31895914 Blo01g01638 Blo-Chr1:56208171 1.19E-13 dispersed
Blo01g01638 Blo-Chr1:56208171 Blo16g00107 Blo-Chr16:2484489 4.43E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo18g00647 . 1 147 Wox Gene Family AT1G46480 64.0 7.4e-49 190.7
Blo04g00142 . 14 188 Wox Gene Family AT3G11260 53.0 4.2e-41 164.9
Blo09g00348 BCT 9 240 Wox Gene Family AT3G03660 50.4 1.3e-47 187.2
Blo01g01638 . 32 190 Wox Gene Family AT1G20700 51.2 1.5e-39 159.8
Blo16g00107 . 41 174 Wox Gene Family AT1G20700 58.4 2.8e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11944 PF00046 Homeodomain 1.10E-17 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01638 Blo_Chr01 FPKM 6.258197 9.404503 9.246527 13.57828 23.668566 28.491966 29.905466 13.936921 12.472294 11.65658