Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01639 ATGGCTGAAACTTGGAATGGGTCGAATGAGCTAGGAAGCCAGACAGACGAGAGTAATTATATTGAGAAGATTCACCTTGAGCCTTTGTATGATACATTTATCTGCCCTTTAACAAAGCAAGTTATGAGGGATCCCGTTACCATAGAGAATGGGCAGACATTTGAACGGGAAGCCATTGAAAAGTGGTTCAAGCAATGCAAAAGTGGGAGGAAGATAGTCTGTCCAGTGACCAGAAAAGAATTAAGAAGCACTGATTTGAACCCAAGTATTGCCCTGCGGAACACCATTGAGGAGTGGATTGCGAGGAATGAAGCCGTGCATCTAGATATGGCTCGCAGATCCTTAAATCTTGGCAGTGCAGAAAATGACATTATGTACTATTTGCAATATGTCCAGGACGTATGCCAAAAAACCCAAGCAAATAAGTATGTCGTACGAGATGCAGGGCTCATACCTATGATCATTGATTTGTTGAGGAGCAGCAGTCAACATGTTCGTTGCAGAACATTACAAACTCTCCATATAGTGGTGGAGGGAGACGACGAAAATAAGGAAGTATTGGCTGAAGGAGACACTGTGCGGACAATAGTGAAATTTTTGTCTCGTGATTTTTCTAAGGAGAAGGAGGAGGCTGTCTCTTTGTTGTTTGAGCTCTCTAAATCTAGAGTGCTGTCTGAGAAGATTTGTTCAATAAATGGAGCAATACTTCTTTTAGGTGGAATGACAAACAGCCAATCAGAGAATCTTTTAATTGTCGAGAAAGCTGATAGAACACTGGAGAATCTGGAAAAGTGTGAAAATTATGTGCAAGAGATGGCTCAAAGTGGCAGACTGCAGCCTCTACTCACTCAGATCCTCGAGGGTCCTCCAGAAATCAAAGTCTCCATGGTTGCTCATCTTGGGGAGCAAGTTTTGAACAATGAACAAAAAATCCTTGTGGCTGAAGCTGTGGGGTCGTCTTTGATTAATATCATGAGAAGCAGTAATATGCAGTCTAGAGAAGCTGCTTTGAAAGCATTAAATCAGATCTCATCTTTTGAGGCGAGTGCAAAAGTGTTGATTGATAAGGGCATACTTCCACCTCTTGTCAAGGGCCTTTTTACGGTCGGATCAAAGCAGCTTCCCATGCGACTGAAGGAGGTTTCAGCAACAATTCTTGCAAATGTTATCAGCTCAGGCAATGACTTCGATTCAATTCCTGTTGGACCTGATCCATTGACTACTTTGGTGTCGGAAGACATAATCCTTAATCTGCTACAACTGATTAGCAACACTGGTCCAGCAATTGAACGTGAGCTTCTCCAGGTTCTTGTCGGTCTCACTAATTCACCCTTCACTGTTCTAAATGTTGTTTCTGCCATAAAAAGCTCTGGTGCAACTATCACCTTGATTCAGTTCATTGAGGCCCCACAGCCTGATTTGCGGGTTGCTTCTCTGAAACTCCTGAAAAATCTCTCCCCACATATGAGCGAGGAACTGGCAGAATCTTTTCGAGTTTCAGTTGGCCAGCTGAGCAGTCTATTTGAAATCATATCAGAAAACACTGTAATCACTGAAGAGCAAGCAGCTGCTGTTGGTGTTCTTGCTGACCTCCCTCAAAGGGATTTGACCATCACAATGAGAATGCTCGATGAAGGAGCCCTCAGGCGGGTTTACTCTAGAGTGATTGGGATCAGACAAGGGGCCACTAGAGGTGGCCGATATATGACCCCATTTCTCGAAGCACTCATTAGAATTCTTGCAAGAGTTACCTTTTTCTTAGCAGATGAGCCTTCCACCCTCGCATTTTGTCGTGACTACAATCTTGCTGGACTCTTTATCGATCTGCTTCACTCCAATGGAATTGATGACGTACAAATGACTTCAGCCATAGCCTTGGAGGCCTTATCTCTACAATCTAAAAAATTGACTAAACTTCCCGAGTTGCCTCCTCCTGGCTTTTGTGGCACAATATTCCATTGTTTTAGCCCACAGCCGAACTTAACAGGACTGTGCAGAATCCATGGAGGGGCGTGTTCTTTGAAAGAGAGCTTTTGTCTTTTGGAAGGCAGGGCAGTAGAGAAGCTTGTCGCACTTTTAGACCATGCAAATGTGAAGGTCGTGGAAGCTGCTCTTGCTGCAATTTCTACTTTGCTGGATGATGAGGTTAACATTGAACAAGGAGTGGTAGTGTTGTGTGATGCCGATGGGGTTAAACCTATACTTGACATATTGCTTGAGAAAAAGTCAGACACACTGAGGAGGAAGGCTGTCTGGACAGTCGAGAGACTTCTTCGCACTGAAGATATTGCATACCAAATTTCTGGAAATCAAAATGTGAATACTGCCCTTGTCGATGCCTTCCAACACGGTGACTACCGAACCCGGCAAATTGCTGAATGCGCTCTAAAGCACGTTGATCGGTTGCCTAATTTCTCCGATATTTTCACCAAAAAGGGATAA 2442 43.78 MAETWNGSNELGSQTDESNYIEKIHLEPLYDTFICPLTKQVMRDPVTIENGQTFEREAIEKWFKQCKSGRKIVCPVTRKELRSTDLNPSIALRNTIEEWIARNEAVHLDMARRSLNLGSAENDIMYYLQYVQDVCQKTQANKYVVRDAGLIPMIIDLLRSSSQHVRCRTLQTLHIVVEGDDENKEVLAEGDTVRTIVKFLSRDFSKEKEEAVSLLFELSKSRVLSEKICSINGAILLLGGMTNSQSENLLIVEKADRTLENLEKCENYVQEMAQSGRLQPLLTQILEGPPEIKVSMVAHLGEQVLNNEQKILVAEAVGSSLINIMRSSNMQSREAALKALNQISSFEASAKVLIDKGILPPLVKGLFTVGSKQLPMRLKEVSATILANVISSGNDFDSIPVGPDPLTTLVSEDIILNLLQLISNTGPAIERELLQVLVGLTNSPFTVLNVVSAIKSSGATITLIQFIEAPQPDLRVASLKLLKNLSPHMSEELAESFRVSVGQLSSLFEIISENTVITEEQAAAVGVLADLPQRDLTITMRMLDEGALRRVYSRVIGIRQGATRGGRYMTPFLEALIRILARVTFFLADEPSTLAFCRDYNLAGLFIDLLHSNGIDDVQMTSAIALEALSLQSKKLTKLPELPPPGFCGTIFHCFSPQPNLTGLCRIHGGACSLKESFCLLEGRAVEKLVALLDHANVKVVEAALAAISTLLDDEVNIEQGVVVLCDADGVKPILDILLEKKSDTLRRKAVWTVERLLRTEDIAYQISGNQNVNTALVDAFQHGDYRTRQIAECALKHVDRLPNFSDIFTKKG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56211543 56214816 + BLOR01639 Blo01g01639 56079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01639 813 SUPERFAMILY RING/U-box 23 109 - -
Blo01g01639 813 Gene3D - 304 557 IPR011989 -
Blo01g01639 813 SMART arm_5 306 345 IPR000225 GO:0005515
Blo01g01639 813 SMART arm_5 672 713 IPR000225 GO:0005515
Blo01g01639 813 SMART arm_5 717 759 IPR000225 GO:0005515
Blo01g01639 813 SMART arm_5 138 178 IPR000225 GO:0005515
Blo01g01639 813 SMART arm_5 346 391 IPR000225 GO:0005515
Blo01g01639 813 SMART arm_5 180 220 IPR000225 GO:0005515
Blo01g01639 813 Pfam U-box domain 31 104 IPR003613 GO:0004842|GO:0016567
Blo01g01639 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 810 - -
Blo01g01639 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 113 IPR013083 -
Blo01g01639 813 SUPERFAMILY ARM repeat 121 444 IPR016024 -
Blo01g01639 813 SMART Ubox_2 32 99 IPR003613 GO:0004842|GO:0016567
Blo01g01639 813 Gene3D - 572 808 IPR011989 -
Blo01g01639 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 810 - -
Blo01g01639 813 SUPERFAMILY ARM repeat 457 801 IPR016024 -
Blo01g01639 813 CDD RING-Ubox_PUB 33 79 IPR045210 -
Blo01g01639 813 Gene3D - 124 303 IPR011989 -
Blo01g01639 813 ProSiteProfiles U-box domain profile. 28 106 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01639 Blo18g00742 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01639 Blo-Chr1:56211543 Blo16g01073 Blo-Chr16:39280455 3.11E-137 dispersed
Blo02g00598 Blo-Chr2:11608238 Blo01g01639 Blo-Chr1:56211543 1.41E-46 transposed
Blo04g00011 Blo-Chr4:109096 Blo01g01639 Blo-Chr1:56211543 5.26E-37 transposed
Blo01g01639 Blo-Chr1:56211543 Blo18g00742 Blo-Chr18:19986181 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01639 - - qsu:112023650 1169.07