Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01642 ATGGACGGGATTGGGTTTGCTTCCGGCGGGTTGCTGGTTCCACCACTCGGACCACTGCCTCCGATGACAGGCCAGGAGTCCTCGTACATGGTTTTATGGCTACGGCTATTCCATCGCCGGACTCTTTCTAAGCTGATACATTATAGAAACGTCTATGTGTATGCCTGGAGTGTTCTGAGAATTTGTCCATCGCCATGTCCGACGGTGGTCCAATCCGGTCAGCTAGCCAAGCCCAGCTGTTATCCCTCTGTAACTGAAAATATTTCTGCCTCTAGACCATCTGTTGTGAAAATTGGAGCTATCTTCTCGTTTGAATCTACCATTGGTAAAGTTGCTAAAATTGCCATGGAGGAAGCTATAAAAGATGTCAACTCCAACTCCACCATTCTCCATGGCGTAAACCTTGTTCTAACAATGCAAAATTCCAATTGCAGTGGGTTTCTTGGAATGGTTGAAGTTCTTCAATTCATGGAGACAGATAATGTTGCCATTATAGGTCCGCAATCTTCTATGGTTGCTCACATTGTATCCCACGTTGCAAATGAACTTCAAGTTCCTCTACTTTCATTTGCAGCCACTGACCCGACACTTTCATCACTTCAATTTCCGTACTTTGTTAGAACTATCCAGAGTGACTTGTTCCAAATGACTGCGGTTGCTGAGATTATTGATCATTATAATTGGAAAGAAATTATTGCTATTTTTATTGATGATGATTTTGGAAGGAATGGGATCGCTGCTTTAGATGATAAACTGGCAGAGAGGCGATGTAGAATATCCTATAAAAAGGGAATCAATCCTGGCTCTCAAGTTAGTCATGATGATATTATTGATCTACTAGTTAAAGTTGCAATGTTGGAATCCCGAGTTGTTGTTCTCCACGTAAATCCTAGTTCAGGCTTCAGAATCTTTTCAGTGGCACAATACCTTGGAATGATGGGTAATGGATATGTTTGGATAGCTACTGATTGGCTCTCATCTGTTTTAGACTCTGCGTCTCCTCTCCCTTCTGACACCATGGATTCAATGCAAGGAGTTCTTGCTTTACGCCAACATACTGCAGATTCCGATAGAAAAAGAGAATTTTTGTCCCGGTGGCACAAGTTAACTGGTGGTTCGTTGGGACTAAATTCTTATGCACTCTATGCTTATGATTCAGTTTGGCTGGCCGCTCATGCTATCGATAACTTTTTGAAGCAGGATGGAGTTATTTCATTTTCTAATGACTCCAAGATACCTTCAGGAATCAGTGGCAATCTTAACCTTGAAGCAATGACCATTTTTGATGGTGGACCTGTCCTATTGAAGAACATACTCGAAAGCAATTTCATTGGTTTGACGGGTCCAGTTAAATTCAATTCTGATAGATCACTCGTTTTTCCAGCGTATGACATCATTAATGTCATTGGGACTGGATATCGCCGAATTGGATACTGGTCAAACTACACTGGTTTATCAACAGTTCCTCCAGAGACGCTTTATAATAAGCCACCTAATCGCTCAAGTGCAACGCAGCAGCTATATGGGGTTCTCTGGCCAGGAGAGACGGTGGCAAAACCTCGTGGATGGGTCTTTCCAAATAATGGGAAAGAACTAAAAATTGGTGTGCCAAATCGGGTTAGTTTCAAAGAATTTGTGTCACAAGTGCGAGGGACTGATATATTCAAGGGTTTTTGCATAGATGTCTTTGCAGCTGCTGTAAACCTCCTGCCATATGCTGTTCCATACCACTTTATTTCATACGGGGATGGTAGAAAGAACCCAAGCTACACCGACCTTGTGAGATTGATAACAACAGGCGTGAGTTATTTTGATGCTGCTGTTGGTGACATTGCTATAGTTACTAACCGAACAAAGATTGTGGATTTTACTCAACCATATGCAGCATCTGGGCTTCTTGTTGTTGCCCCATTCAAAAAACTCAATACTGGTGCCTGGGCTTTCTTACGTCCATTTTCTGCACCTTTGTGGATGGTCACTGCTGGTTTCTTCCTTTTCATTGGTATAGTTGTTTGGATCATGGAGCATAGGATAAATGATGAGTTCAGGGGCCCTCCTAAAAGACAAATAATAACCATTTTGTGGTTTAGCTTCTCTACCTTGTTTTTTGCCCACAAGGAGAACACAGTGAGCACGCTAGGCCGAATGGTGTTGCTTATATGGCTCTTTGTAGTTTTGATAATCAATTCCAGCTACACTGCAAGTCTAACGTCAATTCTCACAGTCCAGCAGCTCTCTTCCCCTATTAGTGGAATTGAAAGCTTAAAAGAGGGTGATGAGCCAATTGGATACCAAGTGGGATCTTTTGCCCAGTATTATTTGACCCAGGAGCTCAATATATCTCAATCCAGGCTTATTGCTCTTGGATCACCTGAAGAATACGCTAAGGCTCTGCAGCTTGGCCCTGCCAAGGGAGGAGTTGCAGCCATTGTTGACGAGCTCCCGTATGTAGAACTATTCCTTTCAAGCCAATGTAAATACAGAGTTGTTGGTGAAGAGTTCACAAAAAGTGGCTGGGGCTTTGCCTTTCCTCGCGACTCTCCACTTGCTGTGGATATGTCAACTGCAATTTTGCAATTGTCTGAGAATGGTGATCTACAGAGGATTCATGATAAATGGCTGAAGAAAAGCACTTGCAGCTTAGATTCAACTGAAATGGAATCCGACCAGCTTCATCTTCGGAGCTTCTTGGGACTCTTTCTTTTTTGTGGTATAGCCTGTTCCATTGCCATCATCATATATTTCATTCAGATTATCAAACAGCTATGCCATGCTCCACCCACCGAATCTATTTCTAGCGGTCGGGGTAGTTCACTTTCCCGCCATCTCGGACGGCTGTGGTCAAAATTGGACGAGAAGGAAAGTGAATCCAACAGTCACAGCAAAAGAAGGAAGCTAGAAGGATCTTCATGTCAACATGAAAATGGTGATTTATTTGCCGAAAATTCCACAAGGAGACAGGCGCAATCAATCAGCGGGGGCAACTTGTAA 2991 42.96 MDGIGFASGGLLVPPLGPLPPMTGQESSYMVLWLRLFHRRTLSKLIHYRNVYVYAWSVLRICPSPCPTVVQSGQLAKPSCYPSVTENISASRPSVVKIGAIFSFESTIGKVAKIAMEEAIKDVNSNSTILHGVNLVLTMQNSNCSGFLGMVEVLQFMETDNVAIIGPQSSMVAHIVSHVANELQVPLLSFAATDPTLSSLQFPYFVRTIQSDLFQMTAVAEIIDHYNWKEIIAIFIDDDFGRNGIAALDDKLAERRCRISYKKGINPGSQVSHDDIIDLLVKVAMLESRVVVLHVNPSSGFRIFSVAQYLGMMGNGYVWIATDWLSSVLDSASPLPSDTMDSMQGVLALRQHTADSDRKREFLSRWHKLTGGSLGLNSYALYAYDSVWLAAHAIDNFLKQDGVISFSNDSKIPSGISGNLNLEAMTIFDGGPVLLKNILESNFIGLTGPVKFNSDRSLVFPAYDIINVIGTGYRRIGYWSNYTGLSTVPPETLYNKPPNRSSATQQLYGVLWPGETVAKPRGWVFPNNGKELKIGVPNRVSFKEFVSQVRGTDIFKGFCIDVFAAAVNLLPYAVPYHFISYGDGRKNPSYTDLVRLITTGVSYFDAAVGDIAIVTNRTKIVDFTQPYAASGLLVVAPFKKLNTGAWAFLRPFSAPLWMVTAGFFLFIGIVVWIMEHRINDEFRGPPKRQIITILWFSFSTLFFAHKENTVSTLGRMVLLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIESLKEGDEPIGYQVGSFAQYYLTQELNISQSRLIALGSPEEYAKALQLGPAKGGVAAIVDELPYVELFLSSQCKYRVVGEEFTKSGWGFAFPRDSPLAVDMSTAILQLSENGDLQRIHDKWLKKSTCSLDSTEMESDQLHLRSFLGLFLFCGIACSIAIIIYFIQIIKQLCHAPPTESISSGRGSSLSRHLGRLWSKLDEKESESNSHSKRRKLEGSSCQHENGDLFAENSTRRQAQSISGGNL 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56222839 56229189 + BLOR01642 Blo01g01642 56082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01642 996 PRINTS Metabotropic glutamate GPCR signature 196 215 IPR000337 GO:0004930|GO:0007186|GO:0016021
Blo01g01642 996 PRINTS Metabotropic glutamate GPCR signature 215 231 IPR000337 GO:0004930|GO:0007186|GO:0016021
Blo01g01642 996 PRINTS Metabotropic glutamate GPCR signature 231 248 IPR000337 GO:0004930|GO:0007186|GO:0016021
Blo01g01642 996 PRINTS Metabotropic glutamate GPCR signature 164 190 IPR000337 GO:0004930|GO:0007186|GO:0016021
Blo01g01642 996 MobiDBLite consensus disorder prediction 950 996 - -
Blo01g01642 996 SMART GluR_14 533 876 IPR001320 GO:0015276|GO:0016020
Blo01g01642 996 Gene3D - 527 644 - -
Blo01g01642 996 SUPERFAMILY Periplasmic binding protein-like II 508 877 - -
Blo01g01642 996 Gene3D - 645 783 - -
Blo01g01642 996 PIRSF IGluLR_plant 74 994 IPR017103 -
Blo01g01642 996 SUPERFAMILY Periplasmic binding protein-like I 90 523 IPR028082 -
Blo01g01642 996 MobiDBLite consensus disorder prediction 950 971 - -
Blo01g01642 996 Pfam Receptor family ligand binding region 114 470 IPR001828 -
Blo01g01642 996 CDD GluR_Plant 530 874 - -
Blo01g01642 996 Pfam Bacterial extracellular solute-binding proteins, family 3 591 875 IPR001638 -
Blo01g01642 996 Gene3D - 808 836 - -
Blo01g01642 996 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 109 125 - -
Blo01g01642 996 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 383 395 - -
Blo01g01642 996 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 169 197 - -
Blo01g01642 996 MobiDBLite consensus disorder prediction 975 996 - -
Blo01g01642 996 PANTHER GLUTAMATE RECEPTOR 3.3 83 989 - -
Blo01g01642 996 CDD PBP1_GABAb_receptor_plant 97 489 IPR044440 -
Blo01g01642 996 Gene3D - 114 460 - -
Blo01g01642 996 Gene3D - 211 485 - -
Blo01g01642 996 Pfam Ligand-gated ion channel 876 907 IPR001320 GO:0015276|GO:0016020
Blo01g01642 996 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 83 989 - -
Blo01g01642 996 Gene3D - 837 873 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01642 Blo-Chr1:56222839 Blo05g00673 Blo-Chr5:22078313 0 dispersed
Blo01g01642 Blo-Chr1:56222839 Blo02g00114 Blo-Chr2:837458 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01642 K05387 - jre:109011487 1393.64