Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01672 ATGGAGGAATATGGTGGTAATGGCGGTGGGCGTTCTCCTCCCACTTACAAAGGAGTCAGGAAGAGAAAATGGGGCAAATGGGTATCCGAAATTCGAGAGCCTGGAAAGAAGACCCGAATATGGCTAGGGAGTTATGAGGCGCCGGAAATGGCCGCCGCCGCCTACGACGTGGCGGCTTTACACCTAAAAGGATCAGGGACCCACCTCAATTTCCCTGAGTTGGCGGAGAGCCTACCTCGCCCGGCGAGCTCCAGGCCTGAAGATATTCAACTAGCGGCTCAAGAAGCAGCATTGCGGTTCAGAAAACCGGGGAGCTTTGCCACGTCGTCGTTAATGGATGAGTCGGGCGGAGAGAGAAGCATTCCGGCGGTGAGAGTGGGTCTGTCGGCAAGCCAAATTCAGGCGATCAACGACTGGCCGTTGGATTCCCCGACGATGTGGATGCAAATGTGTGAAAACGAGGACTGTAGTAATAGCAAACAGTGGAATACGGAGTGGGAAGAAGAGACGAGGCAGTATCAAAATGATCAGTCCCAGTCAATATGGGATTATTAA 555 52.97 MEEYGGNGGGRSPPTYKGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAALHLKGSGTHLNFPELAESLPRPASSRPEDIQLAAQEAALRFRKPGSFATSSLMDESGGERSIPAVRVGLSASQIQAINDWPLDSPTMWMQMCENEDCSNSKQWNTEWEEETRQYQNDQSQSIWDY 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56454109 56454663 + BLOR01672 Blo01g01672 56112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01672 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 15 183 - -
Blo01g01672 184 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Blo01g01672 184 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Blo01g01672 184 MobiDBLite consensus disorder prediction 1 21 - -
Blo01g01672 184 MobiDBLite consensus disorder prediction 161 184 - -
Blo01g01672 184 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Blo01g01672 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 183 - -
Blo01g01672 184 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Blo01g01672 184 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Blo01g01672 184 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Blo01g01672 184 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Blo01g01672 184 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01672 Blo-Chr1:56454109 Blo08g00315 Blo-Chr8:4539119 4.09E-37 dispersed
Blo01g01672 Blo-Chr1:56454109 Blo12g00822 Blo-Chr12:26570630 8.14E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11948 PF00847 AP2 8.00E-13 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01672 - - cpap:110818818 197.978