Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01678 ATGAAAACGCTGACCCAAGCCCTGGCCAAGACCGCCGCGGTGATTGAGAAAACCGTGCAGACGACTGTTCAGGAGGTCACCGGACCCAAGCCTCTTCAGGATTATGAGCTTCTTGATCAGATCGGATCTGCTGGTCACGCTCTCGCATGGAAATTGTACTCCGCCAAGCCTGCACGTGAGTCTACGCGACCACAGCAGTACCCCACGGTCTGCGTTTGGGTGTTGGATAAGAAGGTATTGTCCGAGGCTCGTGTGCGGGCGGGGCTGTCCAAAGCAGCCGAGGATGCGTTTTTGGATCTGATTCGCGCAGATGCGGGACGATTGGTGAGGTTGAGGCACCCGGGAGTGGTGCATGTGGTGCAGGCACTGGATGAGAACAAGAATGCCATGGCTATGGTGACTGAGCCATTGTTCGCGTCGGTGGCTAATGTGCTCGGGAATGTCGAAAACGTTGCTAAAGTGCCTAAGGATCTCAAGGACATGGAAATGGGCTTGTTGGAGATGAAGCATGGTTTACTTCAAGTAGCAGAATCCTTGGATTTTCTTCATAACAATGCACGACTTATTCATAGATCTTTAGCACCTGAGAATGTTCTCATTACTTCAAATGGAGCTTGGAAACTAGCTGGATTTGGTTTTGCAATTTCAGCAGATCAAAATTCAGCCGATGCAACTAATATACAAGCTTTTCATTATGCCGAATATGATGTTGAGGATTCTATATTGCCACTTCAGCCATCACTGAATTACACTGCTCCTGAATTGGTTAAGAGCAAATCATCATCAGCTGGATGTCCTTCTGATATTTTCAGTTTTGGATGCCTTACTTACCATTTGATTGCTCGAAAACCTTTATTTGATTGCCACAACAATGTCAAAATGTACATGAATTCTCTGACATATTTATCCAATGAGGCTTTCTCTCCTATTCCCCCGGATTTAGTTCCAGACTTGCAAAAAATGCTCTCTGCCAATGAATCTTTCCGTCTGACAGCAATGGATTTCACTGCTTCTCCATTTTTTCGAGATGACACAAGGTTGCGGGCACTTCGTTTCCTTGACCACATGCTTGAAAGAGATAATATGCAGAAGTCAGAGTTTTTAAAAGCTCTATCAAGCATGTGGAAAGATTTTGATTCTCGAGTACTGCGGTATAAGGTTCTTCCACCTCTTTGTGCTGAACTTCGTAATTTGGTGATGCAATCAATGATTCTTCCCATGGTTCTCACAATAGCAGAATCTCAGGATAAAATTGATTTTGAGCTGTCGACACTCCCAGCCCTTGTTCCTGTTCTTAGTACTGCTTCTGGCGAGACACTTTTGCTACTTGTGAAACATGCAGAGCTGATAATCAATAAGACTAGCCAGGAGCAGTTAGTATCTCATGTTCTTCCATTGATTGTTCGAGCTTATGATGATAATGATGCTCGTATTCAAGAGGAAGTTTTGAGAAGATCTTCATCCCTTGCTAAGCAGCTTGATCTTCAGCTGGTGAAACAAGCAATTTTGCCTCGTGTTCATGGCTTAGCTCTTAAGACAACAGTTGCTGCGGTCAGAGTGAATGCTTTGTTGTGCTTTGGAGATTTGGTTAATACACTTGATAAACAAGCAGTTCTAGACATCTTGCAAACTATTCAACGCTGTACAGCAGTTGATCGTTCTGCACCTACACTTATGTGCACACTTGGTGTTGCAAACTCGATTTTGAAGCAGCATGGAGTAGAGTTTGTTATCGAGCATGTACTCCCGTTGCTCATGCCCCTACTAACTGCTCAACAGTTGAATGTTCAGCAGTTCGCAAAATATATGCTGTTTGTCAAGGACATTCTCAGGAAGATAGAAGAAAAGCGGGGGGTGATTTTGACTGATTCTGGAATGCCAGAGGTAAAATCATCTGTTGCCTCTAATGGGAGTCAGTTCCAATCATCCAACAAGCATATCGGTACTGTGCCTTCTACTACAAAGAGCAGTCCGGCCTGGGATGAAGACTGGGGCCCTACTGCTAAGGGAACTAATGCTCAACAAATTTCTACAAATATTCCTGCTTTGAGTACTCAGTCAAATCAAATACAGGCAACAGGGCCTGCAAAAACTAGTAATCAACCTGCTATTTCATGCACGCCAGTTGACATTGAATGGCCTCCTCGATTCTCTTCTGGAGTGACCTCCCAGTTAGGTGATTCGGTAAAGCAATCAGCTGCTGGGTCATCGACCAGTTCAAGCTTTGGAGATATGGACCCATTTGCAAACTGGCCCCCAAGACCTAGCAGCACATTAAGTGCATCTAAAACCTCCAACAATGGCTCAATGGGACAATCTTTAAACAAAAGCGAATCTAACACAAGCTCACGTAGACCCATTGATTTGAACTTCCCAAGTAACAGTAATATGAGTTGGACCCTCAACAACCAAAACTCAACTGGACAAAATAGTTGGACTCAAGGAAATTCAGCGATCAGTACAAGCAATCTTGCCAGTGAAGCTTTCAGTTCTCAGAATTCTATTGGGATATCAAAACAGAGCCATGGGATCTCATCTTTAAGTAATTATGCAGAAAAGAAATCCACTGATCCAGGATCTTTATTTAAAAATGAGGTGAGTGCACTCAGACTTGCTCCACCACCCTCAACTGCTGTTGGCAGAGGAAGAGGAAGAGAGAGGATTTCATCTGCGCGTCCCAATCACACAAAATCTCCATCCGAACAACCTCCACTTTTGGATTTGCTGTGA 2730 44.25 MKTLTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYELLDQIGSAGHALAWKLYSAKPARESTRPQQYPTVCVWVLDKKVLSEARVRAGLSKAAEDAFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVLGNVENVAKVPKDLKDMEMGLLEMKHGLLQVAESLDFLHNNARLIHRSLAPENVLITSNGAWKLAGFGFAISADQNSADATNIQAFHYAEYDVEDSILPLQPSLNYTAPELVKSKSSSAGCPSDIFSFGCLTYHLIARKPLFDCHNNVKMYMNSLTYLSNEAFSPIPPDLVPDLQKMLSANESFRLTAMDFTASPFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSSMWKDFDSRVLRYKVLPPLCAELRNLVMQSMILPMVLTIAESQDKIDFELSTLPALVPVLSTASGETLLLLVKHAELIINKTSQEQLVSHVLPLIVRAYDDNDARIQEEVLRRSSSLAKQLDLQLVKQAILPRVHGLALKTTVAAVRVNALLCFGDLVNTLDKQAVLDILQTIQRCTAVDRSAPTLMCTLGVANSILKQHGVEFVIEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVILTDSGMPEVKSSVASNGSQFQSSNKHIGTVPSTTKSSPAWDEDWGPTAKGTNAQQISTNIPALSTQSNQIQATGPAKTSNQPAISCTPVDIEWPPRFSSGVTSQLGDSVKQSAAGSSTSSSFGDMDPFANWPPRPSSTLSASKTSNNGSMGQSLNKSESNTSSRRPIDLNFPSNSNMSWTLNNQNSTGQNSWTQGNSAISTSNLASEAFSSQNSIGISKQSHGISSLSNYAEKKSTDPGSLFKNEVSALRLAPPPSTAVGRGRGRERISSARPNHTKSPSEQPPLLDLL 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56507043 56518179 + BLOR01678 Blo01g01678 56118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01678 909 MobiDBLite consensus disorder prediction 683 817 - -
Blo01g01678 909 Gene3D Phosphorylase Kinase; domain 1 32 135 - -
Blo01g01678 909 MobiDBLite consensus disorder prediction 865 909 - -
Blo01g01678 909 CDD PK_SCY1_like 41 343 - -
Blo01g01678 909 MobiDBLite consensus disorder prediction 753 817 - -
Blo01g01678 909 MobiDBLite consensus disorder prediction 632 660 - -
Blo01g01678 909 MobiDBLite consensus disorder prediction 683 706 - -
Blo01g01678 909 Pfam Protein kinase domain 108 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g01678 909 SUPERFAMILY Protein kinase-like (PK-like) 30 345 IPR011009 -
Blo01g01678 909 MobiDBLite consensus disorder prediction 717 745 - -
Blo01g01678 909 Gene3D Transferase(Phosphotransferase) domain 1 146 344 - -
Blo01g01678 909 MobiDBLite consensus disorder prediction 632 662 - -
Blo01g01678 909 ProSiteProfiles Protein kinase domain profile. 35 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g01678 909 SUPERFAMILY ARM repeat 312 604 IPR016024 -
Blo01g01678 909 Gene3D - 345 618 IPR011989 -
Blo01g01678 909 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 909 - -
Blo01g01678 909 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 5 909 - -
Blo01g01678 909 SMART serkin_6 35 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01678 K17541 SCYL2; SCY1-like protein 2 - jre:109001398 1327.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01678 Blo-Chr1:56507043 Blo11g00418 Blo-Chr11:3645063 2.61E-19 dispersed
Blo01g01678 Blo-Chr1:56507043 Blo17g00197 Blo-Chr17:1987384 1.36E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84122 PF00069 Pkinase 3.50E-24 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01678 Blo_Chr01 FPKM 1.509791 2.00407 1.349049 1.047744 6.491943 5.953914 6.440278 0.541837 0.0 0.391064