Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01688 ATGACTCCATCTAATTTGGCGGCGCCGTTTGGCGATACGACATACACCAAGGTGTTTGTTGGGGGGTTGGCATGGGAAACCCAGCAACAGACGATGAAGAAGTACTTTGAACAGTTTGGTGACATCTGGGAGGCCGTTGTTATTACTGATAAAGCCACTGGAAGATCCAAGGGCTATGGATTTGTAACTTTCCGAGAACCTGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATAGACGGAAGGAGGACCAACTGCAATCTGGCTTTTTTGGGTGTTCAGAGATCCAAGCCTTCAACGCCAAAATATGTCAAAAATTGGGCAGGTAGAGGAGGCAGGAGCTTTAGGGTAACGGGCTCTTTCCAGACAGGGTTTGGAGGGAGTGCTGGAGCAGCTTTTCCTTCACCTGCAACCTTCCCTCATTATGTCTTTCAACAAGGGATGCCTTATAATCTTTATGGGTATTCTTCGTACTCGCCGGATTACACTTACCCTACGAGCTATTACAATGTTTATGGAGTTGCAACCACGCAATATCCAGTGTATGGGACAGGGGTCGGGGGGATGATGACAGCCGGAGGAGCAGCGACAGCCGCTGCAGATGCCGCCTTTTACCCTTTTCTTCAGTTTGGAGAGGGAAGTGGTGGGGCTAATGGCTACTCTTCTGGTCAAGGCTATGGCTTCCAATATCCTCACCATCTCTTTCAATATTCACCTATGACTTCAAATGCTACCACTTATCCTCATCACTATGCTCCACCAATGTCTCTCGCTCCTACTCCTGCTTTGCCATCAGGCGTGACCATGGCTCTCCACGCATCAATTCCACATCCCTAG 843 49.35 MTPSNLAAPFGDTTYTKVFVGGLAWETQQQTMKKYFEQFGDIWEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRTNCNLAFLGVQRSKPSTPKYVKNWAGRGGRSFRVTGSFQTGFGGSAGAAFPSPATFPHYVFQQGMPYNLYGYSSYSPDYTYPTSYYNVYGVATTQYPVYGTGVGGMMTAGGAATAAADAAFYPFLQFGEGSGGANGYSSGQGYGFQYPHHLFQYSPMTSNATTYPHHYAPPMSLAPTPALPSGVTMALHASIPHP 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56599331 56602074 - BLOR01688 Blo01g01688 56128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01688 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Blo01g01688 280 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Blo01g01688 280 SMART rrm1_1 17 89 IPR000504 GO:0003723
Blo01g01688 280 PANTHER OS01G0876800 PROTEIN 1 275 - -
Blo01g01688 280 PANTHER BOULE-RELATED 1 275 IPR037366 GO:0003729
Blo01g01688 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Blo01g01688 280 Gene3D - 11 134 IPR012677 -
Blo01g01688 280 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01688 Blo12g00810 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01688 Blo-Chr1:56599331 Blo18g00730 Blo-Chr18:19540387 1.06E-54 dispersed
Blo01g01688 Blo-Chr1:56599331 Blo12g00810 Blo-Chr12:26465242 3.57E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01688 - - zju:107405501 380.948