Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01706 ATGGAGAACAAACCTAGAGGAACAATCAACCGCATTTTCTGCCATGGTTCGACGGAAATCCATCAGACGGCTAGTCATTTTCAGGAGAGAACTGTTCTTCACGGAATCTCCGGAATGGTGTCGCCGGGAGAGATCCTGGCCGTTCTTGGTCCTTCTGGGAGCGGAAAATCAACTCTTCTCAACGCTCTAGGAGGAAGACTCCATGGTGAAGGCTTCGCCGGAACAATCCTCGCAAATGACAGGAAACTTACCAAATCAGTTCTAAGACAGACCGGGTTCGTCCCTCAGGACGACGTTCTTTATCCCCACCTTACGGTCGGAGAAACTTTGATATTCTGCTGCCTTCTCCGGTTGCCCACAACATTATCCAAGGAAGAGAAAATCACAGTCGCCGAATCGGTTATACTGGAGTTGGGATTGGAAAAGTGCCGAGACACAATTATCGGAAACAGTTTCATTCGTGGAGTTTCGGGTGGGGAGAGGAAGCGAGTGAGTGTAGCTATAGAGCTGCTTGTCAACCCAAGCCTGTTGATTTTGGACGAACCAACGTCTGGATTAGACTCGACAGCCGCACACCGGCTGACGGCCATTCTCGAGTCGCTGGCTCAGAAAGGAAAAACCATCGTCACCTCCATGCACCAGCCTTCCAGCCGAGTTTACCAGATGTTCACCTCCGTTTTGCTTCTCTCGGAAGGGAAGAGTTTGTATTTTGGAAAAGCTTCTGCAGCGATTAACTACTTCGAGTCCGTCGGATTCTCGCCGTCATTCCCAATGAATCCCGCCGATTTCCTTCTCGACCTGGCAAACGGAGTTTGTCAATGTGACAGTGCAAATGAGAACGGCAAGCCTGATGTAAAGCTAAGTCTCGTTTCTTCTTACAATTCTTTGTTGGCTCCAATGGTGAAATCTGCTTGCATGGAATCGATTCTGGCGAGAGGAACGGTTGTCGTCGGAAAACATCCTCCCGCGGGCCGTCGAACCAGTAACTGTAGAAATGCTCTCTCCTCGTGGATGAATCAATTCGGTGTTCTTCTTCATCGAAACCTCAAAGAACGAAAGCACGAGACTTTTAATAATCTGAGAGTGTTCCAAGTAATTACCGCCGCCGTTCTAGCAGGTTTAATGTGGTGGAGGTCGGACTTTCGAGATATTCAAGATCGGCTCGGCCTCCTCTTCTTCATCTCCATCTTTTGGGGAGTTTTCCCTTCGTTTAACTCCGTCTTTGTTTTCCCCCAAGAGCGTGCCATCTTTGTCAAGGAAAGAGCTTCCTCAATGTACAGTCTGTCATCATATTTCATGGCTCGAATAGTTGCAGACTTACCAATGGAGCTCATTCTCCCCACCATTTTCCTCACCATGTCTTACTGGATGGCCGAATTGAAGCCGGAGTTCGGCTCTTTCATCTCCACATTATTAGTCTTACTCGGCTATGTTTTAGTCTCCCAAGGCCTCGGCCTCGCTCTCGGAGCCGCAATAATGAACGCAAAACAGGCCTCGACGATCGTAACCGCGACGATGTTAGCATTTGTTCTGACGGGGGGATTTTACGTGCACAAAGTGCCGTTGTGTATGGCCTGGATTAAGTACATTTCCACTACATATTACAGCTACAGGCTTCTTATAAACATCCAATACGGAGACGGGAAGAAGATCTCACACATTCTAGGCTGTTCAGACGCAGAGAGATCAGCAGCGAGCTGTAAGTTCATAGAGGAGGAAGTGAGAGGTCAGATCGGCGCAGGAACGTGCATTGCAGCCTTGGGTTTGATGTTCGTTGGGTACAGATTACTAGCATATCTTGCGCTGCGCCGAGTGAAAGGCTGA 1824 48.79 MENKPRGTINRIFCHGSTEIHQTASHFQERTVLHGISGMVSPGEILAVLGPSGSGKSTLLNALGGRLHGEGFAGTILANDRKLTKSVLRQTGFVPQDDVLYPHLTVGETLIFCCLLRLPTTLSKEEKITVAESVILELGLEKCRDTIIGNSFIRGVSGGERKRVSVAIELLVNPSLLILDEPTSGLDSTAAHRLTAILESLAQKGKTIVTSMHQPSSRVYQMFTSVLLLSEGKSLYFGKASAAINYFESVGFSPSFPMNPADFLLDLANGVCQCDSANENGKPDVKLSLVSSYNSLLAPMVKSACMESILARGTVVVGKHPPAGRRTSNCRNALSSWMNQFGVLLHRNLKERKHETFNNLRVFQVITAAVLAGLMWWRSDFRDIQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASSMYSLSSYFMARIVADLPMELILPTIFLTMSYWMAELKPEFGSFISTLLVLLGYVLVSQGLGLALGAAIMNAKQASTIVTATMLAFVLTGGFYVHKVPLCMAWIKYISTTYYSYRLLINIQYGDGKKISHILGCSDAERSAASCKFIEEEVRGQIGAGTCIAALGLMFVGYRLLAYLALRRVKG 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56824745 56827629 - BLOR01706 Blo01g01706 56146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01706 607 Pfam ABC-2 type transporter 213 279 IPR043926 GO:0140359
Blo01g01706 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 249 IPR027417 -
Blo01g01706 607 Pfam ABC-2 type transporter 340 545 IPR013525 GO:0016020|GO:0140359
Blo01g01706 607 CDD ABCG_EPDR 30 238 - -
Blo01g01706 607 SMART AAA_5 42 233 IPR003593 -
Blo01g01706 607 Pfam ABC transporter 33 184 IPR003439 GO:0005524
Blo01g01706 607 ProSitePatterns ABC transporters family signature. 156 170 IPR017871 GO:0005524
Blo01g01706 607 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 256 IPR003439 GO:0005524
Blo01g01706 607 Gene3D - 18 250 IPR027417 -
Blo01g01706 607 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 8 605 - -
Blo01g01706 607 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 8 605 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01706 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - rcu:8259382 857.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01706 Blo-Chr1:56824745 Blo16g01044 Blo-Chr16:38888401 0 dispersed
Blo01g01706 Blo-Chr1:56824745 Blo12g00799 Blo-Chr12:26384034 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1424 Blo01g01706 . . . . . . . . . . Cma09g01112 . . . . . . . . . . . . . . . . . . . Cone4ag1210 . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009054 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01706 Blo_Chr01 FPKM 1.465347 2.988991 3.552307 4.010814 4.829815 4.354373 3.392131 7.993621 6.333119 5.8283