Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo01g01719 | ATGTCTAGAGTTTATGTGGGGAACTTAGATCCACGAGTTTCAGAGCGGGAACTTGAAGATGAATTTCGTGTATTTGGAGTTATTAGAAGTGTATGGGTAGCCCGGAGACCTCCAGGTTATGCATTCATTGACTTTGATGACCCCAGAGACGCTCGGGATGCAATCCACGAAATAGATGGTAGGTCGAAGAACGGGTGGAGAGTTGAGCTTTCTCACAACTCTAGAGGTGGTGGAGGGGGTAGAGGTGGAGGTTATGGTCGTTCTGGTAGTTCTGATCTAAAATGTTATGAGTGTGGTGAACCTGGTCACTTTGCTCGTGAATGTCGTACACGCGGAGGTTCAGGAAGACGTCGCAGCCGAAGTCCTCAATATCGCAGAAGCCCAAGTTACGGTCGCAGGATTTTCAATGTTGACGATCAAAGGCCCGAACTTCCCTGGAAGAAAAATGACCCCATCAAACACATTGAGAGTCCATTTCCACCATACAAGGTGCATAAAACACCATTCTTGAAGCCAGAAGTTATTACTACTCGAAACGGCAGCGAAAAAGCATGGCCGAAGAGAATCCTCGATCCAGGAAGTGATGTTATCGTGCAATGGAATAGGATTTTCCTGTTTTCTTGCATAGTAGCATTATTTGTCGATCCATTGTTCTTTTATCTCCCAATTGTTAGGAACTCTGCTAGTTCATTTTGTTTGGCGACTGATTCCAATTTGGAAATTACTTTGACATTTTTCCGGACCGTCGGAGATGTTTTCTCCTTGTTGAATATTGTTCTAAAGTTTCGAACCGCCTATGTATCGCCAAGTTCGCGAGTTTTTGGCCGTGGCGAACTTGTGATGGATCCAAAAAAGATTGCTGGACGCTACTTGAGATCAGACTTCTTCATAGATCTGATAGCAACTCTACCTCTTCCTCAGATTGTAATTTGGTTTGTTATGCGGCCTGCTGATCATACAGACAATACCCTTGTAGTGATTGTTTTGCTCCAATATGTTCCTAAATTGTATTTGATTTTCCCGTTGAGCGCTCAAATTATCAAAGCCACCGGTGTCGTCACAAAGAATGCTTGGGCCGGGGCAGCTTACAATCTCCTGCTATACATGTTAGCTAGTCATGTTCTAGGAGCAGCATGGTATCTATTGTCATTAGAGCGGCTCGCCTCTTGCTGGAAATCCGTATGCAGAAAGGAAATGGATTCGAATTCACTGTGCTCTCTTGATTACCTGCTATGTAGTAGTTTATATGTGGAGAGTGGAACGGGGTGGGAAGCAAATACTACTGTATTTAGCTACTGTAATCCAGCTGAGACTCCAAGTTTCAACTTTGGAATATTTGCAGGGACAATTACAAATAATGCCCTCTCCACGAGTTTTTTGGAGAAGTACTTTTACTGTTTTTGGTGGGGCCTGCAGAACTTGAGTTCCTATGGCCAGAACCTGACTACCAGTTCATTTGTTGGAGAGACTGTTTTTGCTAGCTTCCTTGCCATTGTGGGTCTGGTTTTGTTTGCCCATTTGATTGGAAATATGCAGAATTTTTTGCAATCTATGACTATAAGACTGGAGGAGTGGAGGCTCAAGCGAAGGGACACCGAGGAGTGGATGAATCACCGCCAACTCCCTCGAGATCTACAAGAGCGTGTTCGTCGGTTTGTACTGTGTAAATGGGTTGCAACCCGAGGCGTTGATGAAGAGTCAATCCTACGAGCCCTTCCTACCGACCTTCGCCGAGATATTCAACGCCACCTTTCCCTAGACTTGGTTCGACGTGTCCCTTTTTTTGCACAGATGGATGATCAGTTACTTGATGCAATATGCGAACGATTAGTTTCGTCTCTAAGTACGCAAGGCACTGACATCGTTCGTGAAGGTGACCCAGTGACCGAGATGCTCTTCGTTATTCGAGGGTGTCTCGAGAGTTCTACTACAAACGGTGGCCGAAGTGGTTTCTTCAATTCAATAACATTAAGACCAGGCGATTTTTGTGGGGAAGAACTACTTTCATGGGCATTGCTTCCAACATCATCAGCGAGCTTGCCTCTTTCGACCCGAACAGTTAAAACTCTCGTTGAAGTGGAAGCCTTCGCTCTTTGTGCCGAAGATCTCAAATTCGTCGCTAATCAGTTTAGACGCCTCCATAGCAAGAAGCTTCAACACACGTTCCGATACTACTCGCACCAATGGAGAACTTGGGCTTCCTGTTATATTCAATCTGCATGGCGGCAACACAAGAAGCGGAAGTTGTCAAAAACGCTTAGCGCTAAGGAATTGTTCTACTTCCCTCTCAAGAAGCCATCAGGGGAGGGAACTGAACAAGAAGAGGACGCGACTTATTATATGCATTTGAACAACTTGAAAGTGAAACAGAACCTCGGAGTTACGATACTGGCTTCGATGTTTGCAGCTAACACACGCAGAGGAGTGCAGAAAGTTAGGGATGGCGAATTGAATACATTACAAAAGCCGGACGAACCAGACTTCGCGGCTGCGCCAGACGACTGA | 2505 | 45.31 | MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHEIDGRSKNGWRVELSHNSRGGGGGRGGGYGRSGSSDLKCYECGEPGHFARECRTRGGSGRRRSRSPQYRRSPSYGRRIFNVDDQRPELPWKKNDPIKHIESPFPPYKVHKTPFLKPEVITTRNGSEKAWPKRILDPGSDVIVQWNRIFLFSCIVALFVDPLFFYLPIVRNSASSFCLATDSNLEITLTFFRTVGDVFSLLNIVLKFRTAYVSPSSRVFGRGELVMDPKKIAGRYLRSDFFIDLIATLPLPQIVIWFVMRPADHTDNTLVVIVLLQYVPKLYLIFPLSAQIIKATGVVTKNAWAGAAYNLLLYMLASHVLGAAWYLLSLERLASCWKSVCRKEMDSNSLCSLDYLLCSSLYVESGTGWEANTTVFSYCNPAETPSFNFGIFAGTITNNALSTSFLEKYFYCFWWGLQNLSSYGQNLTTSSFVGETVFASFLAIVGLVLFAHLIGNMQNFLQSMTIRLEEWRLKRRDTEEWMNHRQLPRDLQERVRRFVLCKWVATRGVDEESILRALPTDLRRDIQRHLSLDLVRRVPFFAQMDDQLLDAICERLVSSLSTQGTDIVREGDPVTEMLFVIRGCLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPTSSASLPLSTRTVKTLVEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRYYSHQWRTWASCYIQSAWRQHKKRKLSKTLSAKELFYFPLKKPSGEGTEQEEDATYYMHLNNLKVKQNLGVTILASMFAANTRRGVQKVRDGELNTLQKPDEPDFAAAPDD | 834 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56916482 | 56924657 | - | BLOR01719 | Blo01g01719 | 56159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo01g01719 | 834 | Gene3D | Jelly Rolls | 592 | 712 | IPR014710 | - | |
Blo01g01719 | 834 | Gene3D | - | 1 | 75 | IPR012677 | - | |
Blo01g01719 | 834 | SMART | cnmp_10 | 594 | 725 | IPR000595 | - | |
Blo01g01719 | 834 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 180 | 831 | - | - | |
Blo01g01719 | 834 | SMART | c2hcfinal6 | 94 | 110 | IPR001878 | GO:0003676|GO:0008270 | |
Blo01g01719 | 834 | Gene3D | Helix hairpin bin | 522 | 584 | - | - | |
Blo01g01719 | 834 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 594 | 668 | IPR000595 | - | |
Blo01g01719 | 834 | Pfam | Zinc knuckle | 94 | 109 | IPR001878 | GO:0003676|GO:0008270 | |
Blo01g01719 | 834 | CDD | CAP_ED | 594 | 725 | IPR000595 | - | |
Blo01g01719 | 834 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 86 | IPR035979 | GO:0003676 | |
Blo01g01719 | 834 | Pfam | Ion transport protein | 200 | 520 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Blo01g01719 | 834 | MobiDBLite | consensus disorder prediction | 106 | 132 | - | - | |
Blo01g01719 | 834 | Gene3D | - | 204 | 519 | - | - | |
Blo01g01719 | 834 | SUPERFAMILY | Retrovirus zinc finger-like domains | 75 | 114 | IPR036875 | GO:0003676|GO:0008270 | |
Blo01g01719 | 834 | SUPERFAMILY | Voltage-gated potassium channels | 193 | 516 | - | - | |
Blo01g01719 | 834 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 65 | IPR000504 | GO:0003723 | |
Blo01g01719 | 834 | ProSiteProfiles | Zinc finger CCHC-type profile. | 94 | 109 | IPR001878 | GO:0003676|GO:0008270 | |
Blo01g01719 | 834 | Gene3D | - | 87 | 137 | - | - | |
Blo01g01719 | 834 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 75 | IPR000504 | GO:0003723 | |
Blo01g01719 | 834 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED | 180 | 831 | - | - | |
Blo01g01719 | 834 | CDD | RRM_SRSF3_like | 3 | 73 | - | - | |
Blo01g01719 | 834 | SMART | rrm1_1 | 3 | 71 | IPR000504 | GO:0003723 | |
Blo01g01719 | 834 | SUPERFAMILY | cAMP-binding domain-like | 524 | 716 | IPR018490 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g01719 | Blo-Chr1:56916482 | Blo14g00625 | Blo-Chr14:11893334 | 0 | dispersed | |
Blo06g00870 | Blo-Chr6:32022009 | Blo01g01719 | Blo-Chr1:56916482 | 1.00E-29 | dispersed | |
Blo01g01719 | Blo-Chr1:56916482 | Blo06g01081 | Blo-Chr6:34137623 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo01g01719 | K05391 | - | qsu:111987343 | 949.888 |