Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01719 ATGTCTAGAGTTTATGTGGGGAACTTAGATCCACGAGTTTCAGAGCGGGAACTTGAAGATGAATTTCGTGTATTTGGAGTTATTAGAAGTGTATGGGTAGCCCGGAGACCTCCAGGTTATGCATTCATTGACTTTGATGACCCCAGAGACGCTCGGGATGCAATCCACGAAATAGATGGTAGGTCGAAGAACGGGTGGAGAGTTGAGCTTTCTCACAACTCTAGAGGTGGTGGAGGGGGTAGAGGTGGAGGTTATGGTCGTTCTGGTAGTTCTGATCTAAAATGTTATGAGTGTGGTGAACCTGGTCACTTTGCTCGTGAATGTCGTACACGCGGAGGTTCAGGAAGACGTCGCAGCCGAAGTCCTCAATATCGCAGAAGCCCAAGTTACGGTCGCAGGATTTTCAATGTTGACGATCAAAGGCCCGAACTTCCCTGGAAGAAAAATGACCCCATCAAACACATTGAGAGTCCATTTCCACCATACAAGGTGCATAAAACACCATTCTTGAAGCCAGAAGTTATTACTACTCGAAACGGCAGCGAAAAAGCATGGCCGAAGAGAATCCTCGATCCAGGAAGTGATGTTATCGTGCAATGGAATAGGATTTTCCTGTTTTCTTGCATAGTAGCATTATTTGTCGATCCATTGTTCTTTTATCTCCCAATTGTTAGGAACTCTGCTAGTTCATTTTGTTTGGCGACTGATTCCAATTTGGAAATTACTTTGACATTTTTCCGGACCGTCGGAGATGTTTTCTCCTTGTTGAATATTGTTCTAAAGTTTCGAACCGCCTATGTATCGCCAAGTTCGCGAGTTTTTGGCCGTGGCGAACTTGTGATGGATCCAAAAAAGATTGCTGGACGCTACTTGAGATCAGACTTCTTCATAGATCTGATAGCAACTCTACCTCTTCCTCAGATTGTAATTTGGTTTGTTATGCGGCCTGCTGATCATACAGACAATACCCTTGTAGTGATTGTTTTGCTCCAATATGTTCCTAAATTGTATTTGATTTTCCCGTTGAGCGCTCAAATTATCAAAGCCACCGGTGTCGTCACAAAGAATGCTTGGGCCGGGGCAGCTTACAATCTCCTGCTATACATGTTAGCTAGTCATGTTCTAGGAGCAGCATGGTATCTATTGTCATTAGAGCGGCTCGCCTCTTGCTGGAAATCCGTATGCAGAAAGGAAATGGATTCGAATTCACTGTGCTCTCTTGATTACCTGCTATGTAGTAGTTTATATGTGGAGAGTGGAACGGGGTGGGAAGCAAATACTACTGTATTTAGCTACTGTAATCCAGCTGAGACTCCAAGTTTCAACTTTGGAATATTTGCAGGGACAATTACAAATAATGCCCTCTCCACGAGTTTTTTGGAGAAGTACTTTTACTGTTTTTGGTGGGGCCTGCAGAACTTGAGTTCCTATGGCCAGAACCTGACTACCAGTTCATTTGTTGGAGAGACTGTTTTTGCTAGCTTCCTTGCCATTGTGGGTCTGGTTTTGTTTGCCCATTTGATTGGAAATATGCAGAATTTTTTGCAATCTATGACTATAAGACTGGAGGAGTGGAGGCTCAAGCGAAGGGACACCGAGGAGTGGATGAATCACCGCCAACTCCCTCGAGATCTACAAGAGCGTGTTCGTCGGTTTGTACTGTGTAAATGGGTTGCAACCCGAGGCGTTGATGAAGAGTCAATCCTACGAGCCCTTCCTACCGACCTTCGCCGAGATATTCAACGCCACCTTTCCCTAGACTTGGTTCGACGTGTCCCTTTTTTTGCACAGATGGATGATCAGTTACTTGATGCAATATGCGAACGATTAGTTTCGTCTCTAAGTACGCAAGGCACTGACATCGTTCGTGAAGGTGACCCAGTGACCGAGATGCTCTTCGTTATTCGAGGGTGTCTCGAGAGTTCTACTACAAACGGTGGCCGAAGTGGTTTCTTCAATTCAATAACATTAAGACCAGGCGATTTTTGTGGGGAAGAACTACTTTCATGGGCATTGCTTCCAACATCATCAGCGAGCTTGCCTCTTTCGACCCGAACAGTTAAAACTCTCGTTGAAGTGGAAGCCTTCGCTCTTTGTGCCGAAGATCTCAAATTCGTCGCTAATCAGTTTAGACGCCTCCATAGCAAGAAGCTTCAACACACGTTCCGATACTACTCGCACCAATGGAGAACTTGGGCTTCCTGTTATATTCAATCTGCATGGCGGCAACACAAGAAGCGGAAGTTGTCAAAAACGCTTAGCGCTAAGGAATTGTTCTACTTCCCTCTCAAGAAGCCATCAGGGGAGGGAACTGAACAAGAAGAGGACGCGACTTATTATATGCATTTGAACAACTTGAAAGTGAAACAGAACCTCGGAGTTACGATACTGGCTTCGATGTTTGCAGCTAACACACGCAGAGGAGTGCAGAAAGTTAGGGATGGCGAATTGAATACATTACAAAAGCCGGACGAACCAGACTTCGCGGCTGCGCCAGACGACTGA 2505 45.31 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHEIDGRSKNGWRVELSHNSRGGGGGRGGGYGRSGSSDLKCYECGEPGHFARECRTRGGSGRRRSRSPQYRRSPSYGRRIFNVDDQRPELPWKKNDPIKHIESPFPPYKVHKTPFLKPEVITTRNGSEKAWPKRILDPGSDVIVQWNRIFLFSCIVALFVDPLFFYLPIVRNSASSFCLATDSNLEITLTFFRTVGDVFSLLNIVLKFRTAYVSPSSRVFGRGELVMDPKKIAGRYLRSDFFIDLIATLPLPQIVIWFVMRPADHTDNTLVVIVLLQYVPKLYLIFPLSAQIIKATGVVTKNAWAGAAYNLLLYMLASHVLGAAWYLLSLERLASCWKSVCRKEMDSNSLCSLDYLLCSSLYVESGTGWEANTTVFSYCNPAETPSFNFGIFAGTITNNALSTSFLEKYFYCFWWGLQNLSSYGQNLTTSSFVGETVFASFLAIVGLVLFAHLIGNMQNFLQSMTIRLEEWRLKRRDTEEWMNHRQLPRDLQERVRRFVLCKWVATRGVDEESILRALPTDLRRDIQRHLSLDLVRRVPFFAQMDDQLLDAICERLVSSLSTQGTDIVREGDPVTEMLFVIRGCLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPTSSASLPLSTRTVKTLVEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRYYSHQWRTWASCYIQSAWRQHKKRKLSKTLSAKELFYFPLKKPSGEGTEQEEDATYYMHLNNLKVKQNLGVTILASMFAANTRRGVQKVRDGELNTLQKPDEPDFAAAPDD 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56916482 56924657 - BLOR01719 Blo01g01719 56159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01719 834 Gene3D Jelly Rolls 592 712 IPR014710 -
Blo01g01719 834 Gene3D - 1 75 IPR012677 -
Blo01g01719 834 SMART cnmp_10 594 725 IPR000595 -
Blo01g01719 834 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 180 831 - -
Blo01g01719 834 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Blo01g01719 834 Gene3D Helix hairpin bin 522 584 - -
Blo01g01719 834 ProSiteProfiles cAMP/cGMP binding motif profile. 594 668 IPR000595 -
Blo01g01719 834 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676|GO:0008270
Blo01g01719 834 CDD CAP_ED 594 725 IPR000595 -
Blo01g01719 834 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Blo01g01719 834 Pfam Ion transport protein 200 520 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Blo01g01719 834 MobiDBLite consensus disorder prediction 106 132 - -
Blo01g01719 834 Gene3D - 204 519 - -
Blo01g01719 834 SUPERFAMILY Retrovirus zinc finger-like domains 75 114 IPR036875 GO:0003676|GO:0008270
Blo01g01719 834 SUPERFAMILY Voltage-gated potassium channels 193 516 - -
Blo01g01719 834 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 65 IPR000504 GO:0003723
Blo01g01719 834 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Blo01g01719 834 Gene3D - 87 137 - -
Blo01g01719 834 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 75 IPR000504 GO:0003723
Blo01g01719 834 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 180 831 - -
Blo01g01719 834 CDD RRM_SRSF3_like 3 73 - -
Blo01g01719 834 SMART rrm1_1 3 71 IPR000504 GO:0003723
Blo01g01719 834 SUPERFAMILY cAMP-binding domain-like 524 716 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01719 Blo-Chr1:56916482 Blo14g00625 Blo-Chr14:11893334 0 dispersed
Blo06g00870 Blo-Chr6:32022009 Blo01g01719 Blo-Chr1:56916482 1.00E-29 dispersed
Blo01g01719 Blo-Chr1:56916482 Blo06g01081 Blo-Chr6:34137623 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01719 K05391 - qsu:111987343 949.888