Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01728 ATGTCATTCCGCAGTATAGTACGCGATGTTAGGGATGGACTTGGAAGCTTTTCAAGGCGTAGCTTCGAGGTGAGGATCCCTGGCCACTACAGGGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTGTTGTAATCCAAACCAGTCGATGGGCTAGTCTCCCACCCGAGCTATTGAGTGATGTAATAAAGAGATTGGAGGCTAGTGAGAGTACATGGCCTTCACGAAAGCACGTTGTAGCTTGTGCTTCTGTATGCAGATCATGGAGAGAAATGTGCAAAGAAATCGTCCAAAGTCCAGAGTTTTCTGGCAAGATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAACAATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACTTACCGACTTTTCCTTTGCCTCAGTCCTGCTTTACTTGTTGAGAATGGAAAATTCCTTCTCTCGGCTAAACGAACGAGGAGGACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGACAATATATCGAGATCGAGCTGCACATACATTGGAAAACTGAGGTCAAATTTTTTGGGAACGAAATTCTTAATATTCGATACCCAGCCTCCTTACAATAACGTGCAACTCTCCCCACCCGGTCGAAGCCGAAGATTTTACTCGAAAAAAGTTTCTCCAAAAGTGCCTACTGGTAGTTACAACATTGCTGAGGTTACATACGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCAGCATGCATTCGATCCCCGTCTCAGCCATTGAGCCGGGAGGCTCTATCCCTGGCCAGCCGGAGCTCCTGGCCCGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTTTCGAAAGTTGACAACTGCTCCGAGTTTAGTAGTTCTCGGTTCTCTGACATTGTTAGGTCAAATGAAGAACAAGAAAATGGTACAAAAGACGAGATTCGGCCATTGATTCTTAAGAACAAAGCACCACGTTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTTGCCTCTGTCAAGAACTTTCAGCTGATAGCATCCGAGGAATCACCTCCTGGCCCCCCTGCCCAGCCGCCTCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTTACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAACTGGCTTGTGAATAG 1275 47.37 MSFRSIVRDVRDGLGSFSRRSFEVRIPGHYRGKSHGAVHELHDHPVVIQTSRWASLPPELLSDVIKRLEASESTWPSRKHVVACASVCRSWREMCKEIVQSPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKANLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKLRSNFLGTKFLIFDTQPPYNNVQLSPPGRSRRFYSKKVSPKVPTGSYNIAEVTYELNVLGTRGPRRMHCSMHSIPVSAIEPGGSIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQENGTKDEIRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIASEESPPGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57017987 57021257 + BLOR01728 Blo01g01728 56168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01728 424 Gene3D - 48 101 - -
Blo01g01728 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 424 - -
Blo01g01728 424 SUPERFAMILY F-box domain 46 96 IPR036047 GO:0005515
Blo01g01728 424 Pfam Tub family 114 419 IPR000007 -
Blo01g01728 424 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Blo01g01728 424 Pfam F-box domain 53 99 IPR001810 GO:0005515
Blo01g01728 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Blo01g01728 424 PANTHER TUBBY-RELATED 1 424 - -
Blo01g01728 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Blo01g01728 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Blo01g01728 424 Gene3D Tubby Protein; Chain A 110 424 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01728 Blo12g00786 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00087 Blo-Chr1:1170475 Blo01g01728 Blo-Chr1:57017987 9.45E-147 dispersed
Blo01g01567 Blo-Chr1:55426131 Blo01g01728 Blo-Chr1:57017987 6.51E-159 dispersed
Blo01g01728 Blo-Chr1:57017987 Blo02g00865 Blo-Chr2:33067374 0 dispersed
Blo01g01728 Blo-Chr1:57017987 Blo12g00786 Blo-Chr12:26257209 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11953 PF01167 Tub 8.70E-115 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01728 K19600 - qsu:111992792 754.207