Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01728 ATGTCATTCCGCAGTATAGTACGCGATGTTAGGGATGGACTTGGAAGCTTTTCAAGGCGTAGCTTCGAGGTGAGGATCCCTGGCCACTACAGGGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTGTTGTAATCCAAACCAGTCGATGGGCTAGTCTCCCACCCGAGCTATTGAGTGATGTAATAAAGAGATTGGAGGCTAGTGAGAGTACATGGCCTTCACGAAAGCACGTTGTAGCTTGTGCTTCTGTATGCAGATCATGGAGAGAAATGTGCAAAGAAATCGTCCAAAGTCCAGAGTTTTCTGGCAAGATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAACAATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACTTACCGACTTTTCCTTTGCCTCAGTCCTGCTTTACTTGTTGAGAATGGAAAATTCCTTCTCTCGGCTAAACGAACGAGGAGGACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGACAATATATCGAGATCGAGCTGCACATACATTGGAAAACTGAGGTCAAATTTTTTGGGAACGAAATTCTTAATATTCGATACCCAGCCTCCTTACAATAACGTGCAACTCTCCCCACCCGGTCGAAGCCGAAGATTTTACTCGAAAAAAGTTTCTCCAAAAGTGCCTACTGGTAGTTACAACATTGCTGAGGTTACATACGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCAGCATGCATTCGATCCCCGTCTCAGCCATTGAGCCGGGAGGCTCTATCCCTGGCCAGCCGGAGCTCCTGGCCCGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTTTCGAAAGTTGACAACTGCTCCGAGTTTAGTAGTTCTCGGTTCTCTGACATTGTTAGGTCAAATGAAGAACAAGAAAATGGTACAAAAGACGAGATTCGGCCATTGATTCTTAAGAACAAAGCACCACGTTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTTGCCTCTGTCAAGAACTTTCAGCTGATAGCATCCGAGGAATCACCTCCTGGCCCCCCTGCCCAGCCGCCTCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTTACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAACTGGCTTGTGAATAG 1275 47.37 MSFRSIVRDVRDGLGSFSRRSFEVRIPGHYRGKSHGAVHELHDHPVVIQTSRWASLPPELLSDVIKRLEASESTWPSRKHVVACASVCRSWREMCKEIVQSPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKANLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKLRSNFLGTKFLIFDTQPPYNNVQLSPPGRSRRFYSKKVSPKVPTGSYNIAEVTYELNVLGTRGPRRMHCSMHSIPVSAIEPGGSIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQENGTKDEIRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIASEESPPGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57017987 57021257 + BLOR01728 Blo01g01728 56168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01728 424 Gene3D - 48 101 - -
Blo01g01728 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 424 - -
Blo01g01728 424 SUPERFAMILY F-box domain 46 96 IPR036047 GO:0005515
Blo01g01728 424 Pfam Tub family 114 419 IPR000007 -
Blo01g01728 424 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Blo01g01728 424 Pfam F-box domain 53 99 IPR001810 GO:0005515
Blo01g01728 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Blo01g01728 424 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Blo01g01728 424 PANTHER TUBBY-RELATED 1 424 - -
Blo01g01728 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Blo01g01728 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Blo01g01728 424 Gene3D Tubby Protein; Chain A 110 424 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01728 K19600 TUB, TULP; tubby and related proteins - qsu:111992792 754.207
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01728 Blo12g00786 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00087 Blo-Chr1:1170475 Blo01g01728 Blo-Chr1:57017987 9.45E-147 dispersed
Blo01g01567 Blo-Chr1:55426131 Blo01g01728 Blo-Chr1:57017987 6.51E-159 dispersed
Blo01g01728 Blo-Chr1:57017987 Blo02g00865 Blo-Chr2:33067374 0 dispersed
Blo01g01728 Blo-Chr1:57017987 Blo12g00786 Blo-Chr12:26257209 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00775 . 1 445 TUB Transcription Factor Family AT1G76900 67.4 4.2e-167 584.7
Blo02g00865 . 1 422 TUB Transcription Factor Family AT1G76900 69.5 4.2e-167 584.7
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT1G76900 68.6 4.2e-167 584.7
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT1G76900 68.1 4.7e-166 581.3
Blo13g00300 . 12 437 TUB Transcription Factor Family AT1G76900 66.6 2.9e-160 562.0
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT1G76900 50.5 8.4e-115 411.0
Blo02g00865 . 169 422 TUB Transcription Factor Family AT1G25280 73.8 1.2e-100 363.2
Blo15g00775 . 192 445 TUB Transcription Factor Family AT1G25280 73.0 2.9e-99 358.6
Blo12g00786 BCT 173 427 TUB Transcription Factor Family AT1G25280 66.1 3.7e-94 341.7
Blo01g01728 BCT 173 424 TUB Transcription Factor Family AT1G25280 67.7 6.9e-93 337.4
Blo13g00300 . 187 437 TUB Transcription Factor Family AT1G25280 67.8 9.3e-90 327.0
Blo01g01567 BCT 176 412 TUB Transcription Factor Family AT1G25280 53.6 2.4e-69 259.2
Blo01g00087 . 156 384 TUB Transcription Factor Family AT1G25280 53.2 1.2e-68 256.9
Blo16g00048 . 189 440 TUB Transcription Factor Family AT1G25280 51.2 9.4e-66 247.3
Blo12g00905 BCT 174 410 TUB Transcription Factor Family AT1G25280 52.6 1.2e-65 246.9
Blo01g00087 . 98 384 TUB Transcription Factor Family AT5G18680 61.3 1.8e-94 342.8
Blo02g00865 . 112 422 TUB Transcription Factor Family AT5G18680 54.0 2.1e-82 302.8
Blo01g01728 BCT 112 424 TUB Transcription Factor Family AT5G18680 51.7 6.1e-82 301.2
Blo13g00300 . 123 437 TUB Transcription Factor Family AT5G18680 50.3 5.7e-80 294.7
Blo01g01567 BCT 113 412 TUB Transcription Factor Family AT5G18680 50.3 2.0e-77 286.2
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G18280 58.6 8.2e-135 477.2
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G18280 55.0 1.4e-121 433.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G18280 56.1 2.6e-120 429.1
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G18280 53.0 1.2e-117 420.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.9 2.0e-117 419.5
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G18280 52.2 3.8e-116 415.2
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G18280 53.8 2.0e-112 402.9
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G18280 50.3 7.5e-112 401.0
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G47900 67.2 7.1e-158 553.9
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G47900 57.0 5.5e-134 474.6
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G47900 56.2 2.3e-132 469.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Blo15g00775 . 1 445 TUB Transcription Factor Family AT2G47900 53.8 8.2e-130 460.7
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G47900 56.6 1.1e-129 460.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G47900 55.1 5.3e-121 431.4
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G47900 52.4 6.1e-117 417.9
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G47900 52.9 1.7e-114 409.8
Blo10g00732 . 48 377 TUB Transcription Factor Family AT2G47900 50.8 1.5e-99 360.1
Blo06g00639 . 80 305 TUB Transcription Factor Family AT1G16070 59.1 3.6e-71 265.4
Blo01g01728 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 3.0e-147 518.5
Blo12g00786 BCT 65 427 TUB Transcription Factor Family AT1G43640 66.4 2.0e-143 505.8
Blo02g00865 . 65 422 TUB Transcription Factor Family AT1G43640 67.4 5.8e-143 504.2
Blo15g00775 . 64 445 TUB Transcription Factor Family AT1G43640 64.2 1.4e-141 499.6
Blo13g00300 . 76 437 TUB Transcription Factor Family AT1G43640 63.7 2.6e-135 478.8
Blo01g00087 . 47 384 TUB Transcription Factor Family AT1G43640 51.9 1.7e-102 369.8
Blo12g00905 BCT 64 410 TUB Transcription Factor Family AT1G43640 50.4 2.0e-98 356.3
Blo01g01567 BCT 31 412 TUB Transcription Factor Family AT1G47270 61.8 4.9e-132 468.0
Blo12g00905 BCT 31 410 TUB Transcription Factor Family AT1G47270 63.3 4.2e-131 464.9
Blo16g00048 . 1 440 TUB Transcription Factor Family AT1G47270 54.5 3.2e-123 438.7
Blo01g01728 BCT 48 424 TUB Transcription Factor Family AT1G47270 56.7 1.4e-115 413.3
Blo12g00786 BCT 31 427 TUB Transcription Factor Family AT1G47270 52.2 2.8e-111 399.1
Blo02g00865 . 48 422 TUB Transcription Factor Family AT1G47270 54.3 5.3e-110 394.8
Blo13g00300 . 42 437 TUB Transcription Factor Family AT1G47270 51.4 2.1e-106 382.9
Blo10g00732 . 1 377 TUB Transcription Factor Family AT1G53320 68.1 5.8e-146 514.2
Blo01g00087 . 98 384 TUB Transcription Factor Family AT3G06380 61.1 2.8e-92 335.5
Blo02g00865 . 116 422 TUB Transcription Factor Family AT3G06380 52.9 1.0e-81 300.4
Blo01g01728 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 2.7e-79 292.4
Blo01g01567 BCT 117 412 TUB Transcription Factor Family AT3G06380 51.3 1.8e-78 289.7
Blo12g00905 BCT 115 410 TUB Transcription Factor Family AT3G06380 52.2 2.8e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11953 PF01167 Tub 8.70E-115 CL0395 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01728 Blo_Chr01 FPKM 40.810917 43.048382 56.403214 56.462502 29.874815 25.760126 25.682713 2.490984 2.317022 2.895148