Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01738 ATGGGCTGTGTTCAGACCAAGTCTTCTGAGAACTCACCATCACGGAGCTTGGAGAAGCTGAAATTGGAAAACGGATATGCTGGGAAACCCGAGCTGATCGGCAAGAGAAGATCGTCCAATCCGCAAACTGTCCAAAAAGATCCTAATCAGCCTCACAGACGCCAACCCAGAAACTATAATGGCTTCGATAATGTCCTGGAAGACGGTAAAGAAGGTAAGAATCAAACTGGTTCTAAGAGAGTTTTATCATCTAAATCTCCTGGAGAAGACGAACTGATTAATGGATGGCCAAAGTGGTTGGCTGATAATGTTCCTAATGAAGTTCTTGCTGGGGTGGTTCAAAAAACTGCTGATTCCTATGAAAAACTTGCTAAGGTAGGCCAAGGAACTTATAGTAATGTGTACAAAGCGCGCGATCGAGACACCGGAAAAATTGTCGCGTTGAAGAAGGTTCGAGTTAACATATCAGAACCGGAGAGCATTAAATTCATGGCAAGAGAGATCATGATATTGCAGAAATTGGATCATCCCAATATCGTCAAACTCGAAGGATTGGCCACGTCGAGAATGCAATGGAGTCTTTATCTGGTTTTCGATTTCATGCAGACCGATTTATCGAGAGTCATTTCCCGCCCCGAAAGTAGACTCACCGAGCCGCAGATCAAATGCTATATACAACAATTACTGTCTGGTTTACGGCATTGTCACGGTAAGGGGATATTACACAGAGATATCAAAGCGTCGAACCTTCTTATCGATAAAAATGGAATGCTAAAAATTGCGGATTTCGGCCTCGCCAATTACTTTCGTCCAAAACCGAAGCGTGGTCTTACAAATCGGGTTGTGACCCTTTGGTATAGAGCCCCGGAGCTGTTATTAGGGAGTACAGATTATGGAGTTGGGATTGATCTTTGGAGTGTTGGATGCCTGTTGGCCGAAATGTTCACTGGCAAACCGATACTTCCCGGTCGAACAGAAGTTGAACAACTTCACCGGATTTTCAAGTTATGCGGGACGCCATCGGAGGAATACTGGAGAAAACTGATGCTGCCATCAACTTTTAGACCTCCACAGCTGTTCAAGCCTAGTCTCTCAGAAACATTTAGAAATTTACCAGATTCTTCTTTCGGTCTGTTGAGCACCCTCCTAGCTCTCGACCCTGCATATCGCGGTTCTGCCTCTGCGGCGCTGCAAGACGAGTTTTTTTACACAAAACCGTTGGCCTGTGACCTTTCTGGTCTACCAGTGGTACACAGCCAGGAAGATGACGAGTTAAAGAGAAGCAATAAACAGAGAAGGACTTCTACAACGAAGCGTCGATCTGAAACGCGCCGGAAAGAAGATCCAACCTCTGCAATTCTGAACGAAAATTCTGTATTTTACAATGAGGAGCTGAAGATGACGACTGATAGCAATACGCAGAGCGAGGAGCGAGGGAGTACGACCACGAGTACGTCGTCGGGAGTAAACACGACAGTACAGAAAGAGAGCCCTCTTTTTTTGCCATCCCCAGTTGCCTTTCCTTCCAAGACGTCTTCCAGAACCAACGGCTCTCTCGATGATAACAGCGATTTCTCTCAGTTTCCCAGTTCAAGGAGACAGCCCTCCTACTTCATCGACGGCAACGTCGAGCCGAGACGGGTGAGGAGATCGGAATCCACGAGAGAGCTGAGAAATTGGCCTGAAAAAGACAGGTTTAAACTCTTCGATGATTGTTAG 1719 46.02 MGCVQTKSSENSPSRSLEKLKLENGYAGKPELIGKRRSSNPQTVQKDPNQPHRRQPRNYNGFDNVLEDGKEGKNQTGSKRVLSSKSPGEDELINGWPKWLADNVPNEVLAGVVQKTADSYEKLAKVGQGTYSNVYKARDRDTGKIVALKKVRVNISEPESIKFMAREIMILQKLDHPNIVKLEGLATSRMQWSLYLVFDFMQTDLSRVISRPESRLTEPQIKCYIQQLLSGLRHCHGKGILHRDIKASNLLIDKNGMLKIADFGLANYFRPKPKRGLTNRVVTLWYRAPELLLGSTDYGVGIDLWSVGCLLAEMFTGKPILPGRTEVEQLHRIFKLCGTPSEEYWRKLMLPSTFRPPQLFKPSLSETFRNLPDSSFGLLSTLLALDPAYRGSASAALQDEFFYTKPLACDLSGLPVVHSQEDDELKRSNKQRRTSTTKRRSETRRKEDPTSAILNENSVFYNEELKMTTDSNTQSEERGSTTTSTSSGVNTTVQKESPLFLPSPVAFPSKTSSRTNGSLDDNSDFSQFPSSRRQPSYFIDGNVEPRRVRRSESTRELRNWPEKDRFKLFDDC 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57093845 57096219 - BLOR01738 Blo01g01738 56178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01738 572 MobiDBLite consensus disorder prediction 36 57 - -
Blo01g01738 572 PANTHER CYCLIN-DEPENDENT KINASE 66 508 - -
Blo01g01738 572 MobiDBLite consensus disorder prediction 452 498 - -
Blo01g01738 572 CDD STKc_CDK9_like 120 402 - -
Blo01g01738 572 PANTHER CELL DIVISION PROTEIN KINASE 66 508 - -
Blo01g01738 572 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Blo01g01738 572 Gene3D Phosphorylase Kinase; domain 1 110 202 - -
Blo01g01738 572 Pfam Protein kinase domain 120 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g01738 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Blo01g01738 572 SMART serkin_6 120 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g01738 572 SUPERFAMILY Protein kinase-like (PK-like) 115 407 IPR011009 -
Blo01g01738 572 MobiDBLite consensus disorder prediction 1 89 - -
Blo01g01738 572 MobiDBLite consensus disorder prediction 419 556 - -
Blo01g01738 572 ProSiteProfiles Protein kinase domain profile. 120 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g01738 572 Gene3D Transferase(Phosphotransferase) domain 1 203 445 - -
Blo01g01738 572 MobiDBLite consensus disorder prediction 506 537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01738 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - tcc:18592682 654.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01738 Blo-Chr1:57093845 Blo04g00978 Blo-Chr4:12372772 0 dispersed
Blo06g00617 Blo-Chr6:29098506 Blo01g01738 Blo-Chr1:57093845 2.41E-20 dispersed
Blo01g01738 Blo-Chr1:57093845 Blo02g00578 Blo-Chr2:10643580 4.78E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84124 PF00069 Pkinase 1.60E-68 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01738 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 1.936035 0.0 0.0 0.0