Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01747 ATGGCGGCGGCGACTCCAGCTCCGGTTATTCAGGCCCAGGCAGCAGCCGCTCATTCAGTGGGAGGATTCACGAACGCTTCGTTGTACGTCGGGGATCTTGACCCTAATGTGAATGAGGGGCAGTTGTTAGATCTGTTTAGCCAAATTGCTCAAGTTGTTAGTGTTAGGGTTTGTAGGGATCAGACTCGAAGGCAATCCCTTGGCTATTCCTATGTCAATTTCACTAACCCTCAGGATGCCATCAATGCCATGGATGCTTTGAATTTTACTCCACTTAATGGGAAGCCCATAAGGATTATGTATTCTCACCGTGATCCTAGTATTCGGAAAAGCGGATTTGCAAACGTTTTTATCAAGAATCTAGATACCTCAATAGATAACAAGGCATTGCATGATACTTTTGCTCAATTTGGATCTGTCCTCTCTTGCAAGGTTGCTGTTGATGGAAATGGTCAATCAAGAGGTCATGGATTCGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCTATCAGAAAATTGAATGGCATGCTGATTAATGATAAACAAGTTTACGTTGGGATTTTTGTTCGGCGCCTTGAAAGGAATCAAGTTAACGGATCTCCAAAGTTTACGAATCTTTATGTCAAGAATTTACCTGAAACAACTTCTAACGATGACCTAAAGAAAATTTTTGACTCTTTTGGTACTATCACAAGTGCTGTTGTTATGAAGGACGCAAATGGTAAATCAAGAGGTTTTGGTTTTGTTAACTTTCAGAACTCGGATGCAGCAGCTTCTGCAGTTGAGAAGTTGAATGGCACCACTATTGGTGAGGACAGAGTATTATATGTTGGTAGGGCTCAGAGGAAATCGGAGAGGGAGGCAGAGTTGAAAGTGAAATTTCAACAAGAAAGAATTAGTAAATATGAAAAACTTCAAGGTGCTAATTTATACCTTAAAAATCTTGACGACGGTATCAGCGAAGAGAAACTGAAAGATTTATTCTCTGAGTTTGGAACAATAACATCGAGCAAGGTCTTGATTGGTCAGCATGGGTTGAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTTCGCCAGAGGAAGCAACAAGAGCTTTGAATGAAATGAATGGAAAGATGATTGGACGGAAGCCTCTATATGTTGCTGTGGCTCAGAGAAAGGAAGAAAGGAAGGCTAGACTTCAGGCACACTTTGCACAAATTCGAGCACCTAGTGGCATTGCCCCTCTTCATTCAGGAATTCCTGGATTTCATCCGGGTGCTAGACTTGCCCCTCAACCAATGTATTTTGGTCAAGGAACTCCTGGTATGATTCCCCCTCAGCCCGCTGGTTATGGATTTCAGCAGCAACTCCTACCAGGGATGCGACCTGGTGTCGCCCCAAACTTTATAGTTCCATATCAGCTTCAGAGGCAGAATCAACCTGGACAGCGAATGGGTGTTCGACGAGGGGGAAGCTCCCACCCTCAGCAATTGCAGCAGCAACAGTTAATGCAGCGTAACTCTGGTCAAGGCTTTAGATACATAAGCACTCCACGAAATGGTTTGGACCCATCTATCATGCCTCAAGGTCTCATCACCCCGATGATGCCTGTGGCGTTTGATGGTCCGGGAATGCCTTATTCTCCAACTGATATCCAACGCACCAGACCTCCCATGTCGACTCTTGCTTCTGCCTTAGCATCTGCAAGCCCACAGAGTCAGCGTCTGATGCTGGGTGAGCAGTTGTATCCGCTTGTGGAGCGGCTCGAGGCAGGACATGCTGCGAAGGTGACTGGAATGCTGCTAGAGATGGACCAACCGGAGGTACTTCACCTCATCGAGTCACCTGATGATTTGAAGAGTAAAGTAGCCGAGGCCATGGAAGTCCTTCGCAAAGCCGCAGTGGAGTCTGATGTTTCAGGTCAACTTGGTTCAATGGCACTCAATGAATGA 1935 45.48 MAAATPAPVIQAQAAAAHSVGGFTNASLYVGDLDPNVNEGQLLDLFSQIAQVVSVRVCRDQTRRQSLGYSYVNFTNPQDAINAMDALNFTPLNGKPIRIMYSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFAQFGSVLSCKVAVDGNGQSRGHGFVQFESEESAQNAIRKLNGMLINDKQVYVGIFVRRLERNQVNGSPKFTNLYVKNLPETTSNDDLKKIFDSFGTITSAVVMKDANGKSRGFGFVNFQNSDAAASAVEKLNGTTIGEDRVLYVGRAQRKSEREAELKVKFQQERISKYEKLQGANLYLKNLDDGISEEKLKDLFSEFGTITSSKVLIGQHGLSKGSGFVAFSSPEEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAHFAQIRAPSGIAPLHSGIPGFHPGARLAPQPMYFGQGTPGMIPPQPAGYGFQQQLLPGMRPGVAPNFIVPYQLQRQNQPGQRMGVRRGGSSHPQQLQQQQLMQRNSGQGFRYISTPRNGLDPSIMPQGLITPMMPVAFDGPGMPYSPTDIQRTRPPMSTLASALASASPQSQRLMLGEQLYPLVERLEAGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKAAVESDVSGQLGSMALNE 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57155467 57158911 - BLOR01747 Blo01g01747 56187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01747 644 PANTHER POLYADENYLATE-BINDING PROTEIN 22 632 - -
Blo01g01747 644 PANTHER RNA BINDING PROTEIN 22 632 - -
Blo01g01747 644 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 26 625 IPR006515 GO:0003723
Blo01g01747 644 SUPERFAMILY RNA-binding domain, RBD 26 191 IPR035979 GO:0003676
Blo01g01747 644 Gene3D - 549 629 - -
Blo01g01747 644 Gene3D - 21 113 IPR012677 -
Blo01g01747 644 SMART rrm2_1 206 278 IPR003954 GO:0003676
Blo01g01747 644 SMART rrm2_1 115 187 IPR003954 GO:0003676
Blo01g01747 644 SMART rrm2_1 27 100 IPR003954 GO:0003676
Blo01g01747 644 SMART rrm2_1 310 382 IPR003954 GO:0003676
Blo01g01747 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Blo01g01747 644 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Blo01g01747 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Blo01g01747 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Blo01g01747 644 Gene3D - 293 398 IPR012677 -
Blo01g01747 644 Gene3D - 191 292 IPR012677 -
Blo01g01747 644 SUPERFAMILY PABC (PABP) domain 503 628 IPR036053 GO:0003723
Blo01g01747 644 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Blo01g01747 644 CDD RRM3_I_PABPs 204 284 - -
Blo01g01747 644 CDD RRM4_I_PABPs 308 386 - -
Blo01g01747 644 CDD RRM1_I_PABPs 27 106 - -
Blo01g01747 644 SMART rrm1_1 310 382 IPR000504 GO:0003723
Blo01g01747 644 SMART rrm1_1 115 187 IPR000504 GO:0003723
Blo01g01747 644 SMART rrm1_1 27 100 IPR000504 GO:0003723
Blo01g01747 644 SMART rrm1_1 206 279 IPR000504 GO:0003723
Blo01g01747 644 SMART poly_2 564 627 IPR002004 GO:0003723
Blo01g01747 644 SUPERFAMILY RNA-binding domain, RBD 204 390 IPR035979 GO:0003676
Blo01g01747 644 Coils Coil 286 306 - -
Blo01g01747 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 272 IPR000504 GO:0003723
Blo01g01747 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Blo01g01747 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Blo01g01747 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Blo01g01747 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Blo01g01747 644 CDD RRM2_I_PABPs 112 187 IPR045305 -
Blo01g01747 644 Gene3D - 114 188 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01747 Blo-Chr1:57155467 Blo18g00646 Blo-Chr18:11570892 0 dispersed
Blo01g01747 Blo-Chr1:57155467 Blo04g00479 Blo-Chr4:3968617 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01747 K13126 - zju:107421570 941.414