Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01749 ATGGGTCTGATTCTTGGAATTTTAGGGTTTTTGTTATTCGATGGCTTTCTTCTAGCCATGGCTCGTAATGTTCATCACTACACCTTCATTATGGAAGAGAAGAACTTTACCAGACTCTGCTCTACGAAGAGCATGTTGGTCGTAAATGGCATGTTTCCTGGTCCGACAATCCATGTTCGTAAAGGCGATACGGCTTTCGTTAATGCTATCAACAAAGGACCTTACGGCGTCACACTTCACTGGCATGGAGTGAAGCAACCAAGGAATCCATGGTCGGATGGGCCAGAAAACATAACGCAGTGTCCAATAAAACCAGGCCATAATTTCACGTACGAGGTTATATTCTCTACTGAAGAAGGGACCCTCTGGTGGCACGCTCACAGCGACTGGACTCGAGCCACCGTGCATGGCGCCATTGTCATTTCACCGCCCATCGGCGACTCGTTCCCTTTCCCCAAACCTTACGCAGAAAAAGTCCTTGTGACAGGTGAATGGTACAAAGGAGATGTCATGGAAATAATAACCACTGCCTTAGCAACAGGTGGTGATCCAAATGTATCTAATGCCTACACCATCAATGGTTTTGTAGGATCATTATCCAACTGTTCTTCGGATCTGACGTACAACTTGACAGTAACTCAAGGAAAGACCTATCTTCTGAAAGTTGTCCATGGCGGGATGAATGAGGCCCACTTCTTTGGAATAGCCAACCATACATTAACTGTCGTGGGTCAAGATGGTGCCTATTTAAAACCCTTCGTTTCATCTTATATAATGATATCTCCAGGCCAGACAATGGATCTTTTACTCACAGCAAATCAATCTGCAAGCCACTACTACATGGCTGCTTATCCATTCTTCGATAGTGCAGCTCTCTATAACAATTACACAGTCACAGCACTTGTGAAATATGAAGGAAACTACACTGCTCCATCGTCTCTTCCTCTTCCAGATCTGCCTGAAATTTCGAACGAAACTGCTGCTTTTGAGTTCGGGCAGAAAAAGAAGTCCTTGTATACTGAGAAACATCCTATTTCTTTTCCAACGGGTTCAGTTGATGAGAAAATGTTAATTACTGTTTCTATTGCTGAGATTTTATGCCCAAATGCTTCCTGTGATGGGCCTGACAATAATAGAATTTCTTCTAGCTTAAACAACATAAGCTTTGACACCCCTAAGATTGATGTTTTGCAGGCATACGTCAGGAATATCTCGGGAGTCTTTGACCCGACCTTCCCAGACTTCCCACCAAACTATTATAACTTCACAGGAGATGTTGGAAATAACACTCTATATCCAACAGTTGCGACAAGAGCCAAGGTGTTTGACTATAACTCATCAGTTGAAGTGGTTTTCCAGGGCACCAACGTTATTGCAGCTGAGAGCCATCCCATTCATCTCCATGGATTTAGCTTCTTCTTGGTCGGGCGTGATTACGGTAACTTCAATGATTCTAGCAACAAAACTTACAACTTGGTTGATCCTCCAGAAATCAACACTTTCTCTCTCCCGAGAAACGGTTGGGCTGCCATTCGATTCTACGCCGACAATCCCGGTGTGTGGTTTTTACACTGTCATTTGGAGAGACATGCTAGCTGGGGTATGGAGACGGTGTTCATAGTGAAAAACGGGACAACCGAAGAGACCAGTTTGAGGCAACCTCCACCCGGTCTTCCTACATGTTCCTAG 1689 44.35 MGLILGILGFLLFDGFLLAMARNVHHYTFIMEEKNFTRLCSTKSMLVVNGMFPGPTIHVRKGDTAFVNAINKGPYGVTLHWHGVKQPRNPWSDGPENITQCPIKPGHNFTYEVIFSTEEGTLWWHAHSDWTRATVHGAIVISPPIGDSFPFPKPYAEKVLVTGEWYKGDVMEIITTALATGGDPNVSNAYTINGFVGSLSNCSSDLTYNLTVTQGKTYLLKVVHGGMNEAHFFGIANHTLTVVGQDGAYLKPFVSSYIMISPGQTMDLLLTANQSASHYYMAAYPFFDSAALYNNYTVTALVKYEGNYTAPSSLPLPDLPEISNETAAFEFGQKKKSLYTEKHPISFPTGSVDEKMLITVSIAEILCPNASCDGPDNNRISSSLNNISFDTPKIDVLQAYVRNISGVFDPTFPDFPPNYYNFTGDVGNNTLYPTVATRAKVFDYNSSVEVVFQGTNVIAAESHPIHLHGFSFFLVGRDYGNFNDSSNKTYNLVDPPEINTFSLPRNGWAAIRFYADNPGVWFLHCHLERHASWGMETVFIVKNGTTEETSLRQPPPGLPTCS 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57224568 57227912 - BLOR01749 Blo01g01749 56189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01749 562 SUPERFAMILY Cupredoxins 151 324 IPR008972 -
Blo01g01749 562 CDD CuRO_3_LCC_plant 407 544 IPR034289 GO:0005507
Blo01g01749 562 CDD CuRO_2_LCC_plant 159 304 IPR034285 -
Blo01g01749 562 ProSitePatterns Multicopper oxidases signature 1. 519 539 IPR033138 -
Blo01g01749 562 PANTHER LACCASE 25 561 - -
Blo01g01749 562 CDD CuRO_1_LCC_plant 27 143 IPR034288 GO:0005507
Blo01g01749 562 Pfam Multicopper oxidase 422 543 IPR011706 GO:0005507|GO:0016491
Blo01g01749 562 Gene3D - 18 144 IPR008972 -
Blo01g01749 562 Gene3D - 369 562 IPR008972 -
Blo01g01749 562 SUPERFAMILY Cupredoxins 375 560 IPR008972 -
Blo01g01749 562 Gene3D - 154 326 IPR008972 -
Blo01g01749 562 SUPERFAMILY Cupredoxins 18 167 IPR008972 -
Blo01g01749 562 Pfam Multicopper oxidase 158 306 IPR001117 -
Blo01g01749 562 TIGRFAM laccase: laccase 23 561 IPR017761 GO:0046274|GO:0048046|GO:0052716
Blo01g01749 562 PANTHER MULTI-COPPER OXIDASE 25 561 IPR045087 -
Blo01g01749 562 ProSitePatterns Multicopper oxidases signature 2. 524 535 IPR002355 GO:0005507
Blo01g01749 562 Pfam Multicopper oxidase 32 144 IPR011707 GO:0005507
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01749 K05909 E1.10.3.2; laccase [EC:1.10.3.2] - jre:109008603 774.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01749 Blo-Chr1:57224568 Blo12g00868 Blo-Chr12:26891520 0 dispersed
Blo01g01749 Blo-Chr1:57224568 Blo16g00049 Blo-Chr16:1896281 1.98E-171 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1312 Blo01g01749 . . . . . . Bma01g02530 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000013 13 15 12 14 11 15 17 15 13 14 14 15 22 14 16 19 15 33 6 15 14 14 15 20 18 14 13 15 19 34 484
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01749 Blo_Chr01 FPKM 242.957077 282.776642 275.289551 272.082672 149.841232 111.980827 143.68483 103.698753 117.383041 117.179749