Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01771 ATGGTCACAGAAGTTCGAATTAAACCTTATTTGGAAACTTTCGATCAGGCATCAAGGGCTAGGCTGTTCAAGGAATACAAGGAAGTGCAGAGAGAAAAGGCGGTTGATCCAGATATCCAACTAGTTTGTGATGATTCTAACATATTTAAATGGACTGCTCTTATTAAGGGTCCATCAGAGACTCCATATGAAGGTGGGGTTTTCCAGCTAGCGTTTGCTGTTCCTGAGCAGTATCCTTTGCAACCTCCTCAAGTGCGATTTTTAACTAAAATTTTTCATCCAAATGTACACTTTAAGACAGGTGAGATTTGCCTGGACATATTAAAGAATGCATGGAGTCCAGCTTGGACGCTCCAATCTGTATGTAGGGCAATAATTGCTTTGATGGCACATCCCGAAGCTGACAGTCCGTTGAACTGTGATTCTGGCAATCTTTTGCGCTCTGGTGATATTCGAGGCTATCAGTCGATGGCGAGGATGTATACTAGACTAGCGGCCATGCCCAAGAAAGGTTAA 516 43.02 MVTEVRIKPYLETFDQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEADSPLNCDSGNLLRSGDIRGYQSMARMYTRLAAMPKKG 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57437038 57438146 + BLOR01771 Blo01g01771 56211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01771 171 Pfam Ubiquitin-conjugating enzyme 21 161 IPR000608 -
Blo01g01771 171 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 12 171 - -
Blo01g01771 171 SUPERFAMILY UBC-like 16 167 IPR016135 -
Blo01g01771 171 SMART ubc_7 20 167 - -
Blo01g01771 171 CDD UBCc 21 162 IPR000608 -
Blo01g01771 171 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 92 108 IPR023313 -
Blo01g01771 171 PANTHER BNAA09G04490D PROTEIN 12 171 - -
Blo01g01771 171 Gene3D Ubiquitin Conjugating Enzyme 13 166 IPR016135 -
Blo01g01771 171 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 17 167 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01771 K10689 PEX4; peroxin-4 [EC:2.3.2.23] - tcc:18587943 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01771 Blo-Chr1:57437038 Blo10g00734 Blo-Chr10:23031825 4.56E-30 dispersed
Blo07g01310 Blo-Chr7:33358912 Blo01g01771 Blo-Chr1:57437038 2.48E-10 dispersed
Blo01g01771 Blo-Chr1:57437038 Blo12g00760 Blo-Chr12:25937278 7.88E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g317 Blo01g01771 . . Bda03g00426 . Bpe02g00173 . Bma01g02552 Cmo05g00625 Cmo12g00213 . Cma05g00599 . Car12g00244 Sed01g1278 Cpe07g00224 . Bhi04g00831 Tan02g2574 Cmetu03g0651 . Hepe10g0349 . Lcy13g1394 . . . . . . . . . . . . . . Cme03g01732 . . . . . Bpe04g00392 . . . . . . Cma12g00260 . Car05g00542 Cpe11g00523 . . . . . . . . Cla08g01231 . . . . . . Lsi08g01094 . Chy03g01238 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011133 1 1 1 0 2 0 2 0 0 1 1 0 1 1 1 2 0 1 2 0 1 1 1 1 1 1 1 5 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01771 Blo_Chr01 FPKM 2.175 2.183932 3.177289 3.069243 4.473913 3.595371 3.990449 3.129426 3.838274 2.981694