Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01774 ATGGAGTTCAACGAGGGGAGGAACAGAACTCTCTCCAGCTCCATGGAAGAAGATCGGAAAAAGAAGAGTAGAGCTCATTCAAACGGCCGTCGTTCATTGGCTCATTTGGGTCAAGAAATCACTCATCAAGAACATGATCGTCGTCATCGTCGTCTTCATGAACTTCAGTTCAGTACCTCTTCAATGGCGTCCACCCCACCTCGTAGCCCAGAATCTCCATGGACTCTTTCCCGCATGCAAACTCCATCTCCTTCTCTTCTCTACCACTGCATTGCCTCGCTTCATCGCCACGAAGGAAATATACAGTCCATCGCCATTTCAGATGGCGTCGTTTTCACTGGCTCAGATCAAAGCAGCAGAATTCGGGCATGGAGAAAACCAGACTGCATGGAGAGAGGTCATGTGAAAGCTGGGTCGGCTAAAGTGAAAGCCATGGAAGCATACGGAAACATGCTCTTCACTTCTCACAAAGATAACAGAATTCGGATATGGAGTTTCACTGCTTCAGAAATTTTTCGATCCAGAAAGATTTCTTCTCTTCCAAGAAAAAGCTCTCTTCTTTCTTGTACCAGCTCAAAAGCCCATTCTCAGCTCATTTCTTGCTTGGCGTATTACCATTCAGAAGAGCTTCTTTACACCGCCTCGCACGACAGTACAGTGAAAGCATGGCGGATTTCAGACAGGAAATGTGTAGACTCCTTTCGAGCTCACGATGATTATATTAATGAAGTTCTAGTGAATCAGGAAGATGGGTGCGTCTTCACTTGTTCATCTGATGGATCAGTGAAAATCTGGCGCAGGGTTTACAAAGAAAACTCCCACACTCTCACCGTGACTCTGAAATTCCAGCCTTCACCTGTAAACGCCATAGCTTTAAGCTCCTATTTCAACTCCGTTTTCCTTTACGCAGGGTCTTCAGACGGAACAATAAATTTCTGGGAGAAAGAGAAACTTACTTACAGGTTCAACCATGGAGGTTTCTTACAAGGTCATCATTTTTCAGTACTTTGCTTAGAAGCCATAGAGAAGCTGGTTTTCAGTGGGTCGGAGGACACAACAATAAGGATATGGCGGAGAGAAGAAGGAAGCCATTGCCATGAGTGTTTGGCTGTGATGGACGGCCATAGAGGGCCTGTAAAATGCTTGGCTGCATGCTTGGAAATGGAGAAGGTGGGAATGCGGATTTTGGTTTATAGTGGGAGTTTGGACCAGAGCTTTAAGGTATGGAGGGTGAAGATTATGGCAGAAAATGGAGAGAAAAGCTGTGGAAATTATAATTCAGATCATCAGAAGAAGATGAAGATGAAAATGGTGGACTACGAGATGAGCCCTGTGTTGTCTCCTTCTTGGGTGGAGAAGAAGGTACAAGGCCACCGTTTTCAGTAG 1386 45.31 MEFNEGRNRTLSSSMEEDRKKKSRAHSNGRRSLAHLGQEITHQEHDRRHRRLHELQFSTSSMASTPPRSPESPWTLSRMQTPSPSLLYHCIASLHRHEGNIQSIAISDGVVFTGSDQSSRIRAWRKPDCMERGHVKAGSAKVKAMEAYGNMLFTSHKDNRIRIWSFTASEIFRSRKISSLPRKSSLLSCTSSKAHSQLISCLAYYHSEELLYTASHDSTVKAWRISDRKCVDSFRAHDDYINEVLVNQEDGCVFTCSSDGSVKIWRRVYKENSHTLTVTLKFQPSPVNAIALSSYFNSVFLYAGSSDGTINFWEKEKLTYRFNHGGFLQGHHFSVLCLEAIEKLVFSGSEDTTIRIWRREEGSHCHECLAVMDGHRGPVKCLAACLEMEKVGMRILVYSGSLDQSFKVWRVKIMAENGEKSCGNYNSDHQKKMKMKMVDYEMSPVLSPSWVEKKVQGHRFQ 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57457600 57458985 - BLOR01774 Blo01g01774 56214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01774 461 SUPERFAMILY WD40 repeat-like 89 411 IPR036322 GO:0005515
Blo01g01774 461 PANTHER OS01G0232200 PROTEIN 8 454 - -
Blo01g01774 461 Pfam WD domain, G-beta repeat 367 409 IPR001680 GO:0005515
Blo01g01774 461 Pfam WD domain, G-beta repeat 327 357 IPR001680 GO:0005515
Blo01g01774 461 Pfam WD domain, G-beta repeat 133 165 IPR001680 GO:0005515
Blo01g01774 461 Pfam WD domain, G-beta repeat 193 223 IPR001680 GO:0005515
Blo01g01774 461 Pfam WD domain, G-beta repeat 229 265 IPR001680 GO:0005515
Blo01g01774 461 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Blo01g01774 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 265 IPR001680 GO:0005515
Blo01g01774 461 MobiDBLite consensus disorder prediction 37 55 - -
Blo01g01774 461 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 454 IPR045182 -
Blo01g01774 461 MobiDBLite consensus disorder prediction 1 78 - -
Blo01g01774 461 SMART WD40_4 365 410 IPR001680 GO:0005515
Blo01g01774 461 SMART WD40_4 227 266 IPR001680 GO:0005515
Blo01g01774 461 SMART WD40_4 321 358 IPR001680 GO:0005515
Blo01g01774 461 SMART WD40_4 185 224 IPR001680 GO:0005515
Blo01g01774 461 SMART WD40_4 87 125 IPR001680 GO:0005515
Blo01g01774 461 SMART WD40_4 128 165 IPR001680 GO:0005515
Blo01g01774 461 SMART WD40_4 273 314 IPR001680 GO:0005515
Blo01g01774 461 MobiDBLite consensus disorder prediction 56 78 - -
Blo01g01774 461 Gene3D - 73 175 IPR015943 GO:0005515
Blo01g01774 461 Gene3D - 176 449 IPR015943 GO:0005515
Blo01g01774 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 265 - -
Blo01g01774 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Blo01g01774 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 367 IPR001680 GO:0005515
Blo01g01774 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01774 - - - dzi:111286182 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01774 Blo-Chr1:57457600 Blo13g00559 Blo-Chr13:27589234 1.72E-73 dispersed
Blo01g01774 Blo-Chr1:57457600 Blo01g01543 Blo-Chr1:55105169 1.01E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g302 Blo01g01774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed12g1397 Cmo01g01485 . . . . . . . Bhi09g02581 Tan01g3936 Cmetu04g0169 . . Mch11g0772 . . . . . . . . . . . Cme04g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004018 2 2 2 1 0 1 0 2 1 3 1 1 1 2 3 2 1 2 1 1 1 2 1 2 0 0 2 1 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01774 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0