Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01775 ATGAGTTCGGAAGTAACTGAGAGCAGCTCATACTCATTCTTATCGGAATCTTCAACAGGTCAATCCAGTCAGAGCTCGGACCCTAAGAAGGCTAAGCGAATACGAGACTCGAGCAAGCACCCAATCTACCGGGGAGTTCGAATGAGAAATTGGGGCAAATGGGTTTCTGAAATTCGGGAACCTCGAAAGAAATCTCGCATTTGGCTCGGAACCTTCCCTAGCCCTGAAATGGCTGCGAGAGCACACGACGTAGCTGCTTTAAGCATCAAAGGTAGCTCTGCTATTCTCAACTTTCCTGAACTCGCCGATTCCCTTCCTCGTCCAGTCTCCATCGCTCGCCGGGACGTTCAAGCGGCTGCGGCAAAGGCTGCTCAGATGGAGAAATTTGACTCTCCTTCGTCAATGTCAGTTTCTATGGCGATGTCGTCATCGGCTTCTTCGCTGTCGTCGCTAGTTTCTGCGATGGATTTGTCGTCTCCAGCGACGAATGAGTCAGATGAGTTGAGCGAGATCCTGGAATTGCCGAGTCTGGGGAACGGGCATGAGTCGCACGAGTTGAGCAGTGAGTTTGCATTTTTCGACTCCAATGAGGGGTGGGCTTATCCACCGCCATGGTTGCAGAGTATAGACGAGTATGAATACGACAACAAAGTGAAGGATGAGGTGGGAGTTGGAGACTGTAACGAGTACGTTCTTTGGGATTACTGA 708 50.42 MSSEVTESSSYSFLSESSTGQSSQSSDPKKAKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGSSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEKFDSPSSMSVSMAMSSSASSLSSLVSAMDLSSPATNESDELSEILELPSLGNGHESHELSSEFAFFDSNEGWAYPPPWLQSIDEYEYDNKVKDEVGVGDCNEYVLWDY 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57464582 57465289 + BLOR01775 Blo01g01775 56215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01775 235 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Blo01g01775 235 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Blo01g01775 235 MobiDBLite consensus disorder prediction 1 41 - -
Blo01g01775 235 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Blo01g01775 235 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Blo01g01775 235 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Blo01g01775 235 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Blo01g01775 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 216 - -
Blo01g01775 235 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Blo01g01775 235 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Blo01g01775 235 MobiDBLite consensus disorder prediction 1 27 - -
Blo01g01775 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01775 Blo-Chr1:57464582 Blo17g00070 Blo-Chr17:534712 1.76E-81 dispersed
Blo01g01775 Blo-Chr1:57464582 Blo12g00754 Blo-Chr12:25896657 4.25E-105 wgd
Blo01g01775 Blo-Chr1:57464582 Blo18g00081 Blo-Chr18:691852 2.55E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11959 PF00847 AP2 1.60E-13 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01775 K09286 - tcc:18587975 256.914