Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01776 ATGCTTGATAGAATTTCTTCTAATTTAGGTATTTCTTCTTCAATTAATGGTGCTCAATTAAGAAATGAAATTGATAATTTATTTTCTTCTTATGAAATTAAATATTCTAATAATCGTTCAATTCCGTCATATGATATGCATGCTAGTTCTAGTAGTGGTGCTTGTGGTGGAGATCCACAAGATTTTATGTATGATATATTTAAGCAAATAGATAGCAATGTTCATTCTTATAATTCACAAAGAAATGAACTCGATATTTATCTTAACACCTACCATAACATTTCTTGCCCCGAGGATTTTGATATTTTGGCTTGGTGGAAAGTCAACTCTATTTCATTTCCTATTCTTTCTAGAATGGCACGTGATCTACTAACACCTCCGGTCTCTACAGTAGCATCGGAGTCTGCTTTTAGTGCAGGTGGACGTGTGTACGATGATAAACGAGGAAGACTTGCACCAGAAATCAGTGGAAGTGGAATACTGGAATCTCCACGGAATACTGAAAGCATTGATGAGAATGAGAATAAACCGGATCCGGATAAGGATGGTACGATCTCTACTTTATGTTGTCATCACTCAACTTCAGCTATGGCTACTCTGGGGGATGACGAACTAGGCCAAATCCTCAATTTGATTCGTTGCCATGGTGACAGAAAATCCTTCTCCCTTGTTTGCAAGCAATGGATGAGAGTGGAGGGGCTAACCCGATCATCAATTCGAGTATTCGAATCCGATTATCTGCGTCGTCTGTTACCTAGATTCCCTAATTTGGTTTCTTTCGAATCATCCACATTCATCGCCGACGATCAACTTCAGTTCTTGGCTAAGACATGTCCTAAAATCGAGGTTGTCAACCTGAATTTCAAGAACCCGCGCGGAAATTATGATGGATTTGTTGAGCCGTCGGATTTCGATGGGGTTGGGGACAATGGCATTATCGCCTTGGCTAATGGATGTCTCAACTTGAAGAAAGTTTTGCTGAGAAGGAGAAAGAAAATTGGCGATTTCGGAGTTCTCTCTCTCGCGAAAATTGCTCGGAATTTGACCTACTTGGATTTGGGGTGGTGCAATTTGATCACCGACCAGTCGCTGAAAGCGATTAGTTCTCTCAATTCGATTACGACGTTGAATCTGCTAGGGTGTTCGTTGATTACCGATGCGGGATTAGGTTTTCTGGCTACTGGATCATCCTCGATGAGCATGAGAAAGCTTGTTATTTCAGAGTGTGATCGAGTAACTGATAATGGAGTGTCGCTTTTCCAGCAAATGAGTTGTCTGGAGGAGATAAACATATCAGATTGCGGGCCGAAAATCACAGACATTGGAGGTGTAGCTCTTGCCGTCATTCCAGCTCTCAAAAGATTAAACATGGCGTGGTTGATCAACATTTCCGATTATACAATCATAGCGCTGGCGGAGAATTGCAGGAGCTTGAAGGCAATGGATTTAACAGGTTGCGAACTGGTAAGCGGAGCTGGAATCAGGGCATTCAGCGGCCACGGGAGCTTAGAGGAGCTGGTGATGGCCTCGTGTTTCAACATCAACGGGAATGACATAGAGCAGATGGTGCTTGGCTGCCGGAGTCTGAAACACATTGTAATAGAGAAAGGGCTGAGAATCTGGATTCCGAATCAAATGATTGAAAACTTGAGCAGATTGTGTGACTTCCATTGGCGATGA 1680 42.2 MLDRISSNLGISSSINGAQLRNEIDNLFSSYEIKYSNNRSIPSYDMHASSSSGACGGDPQDFMYDIFKQIDSNVHSYNSQRNELDIYLNTYHNISCPEDFDILAWWKVNSISFPILSRMARDLLTPPVSTVASESAFSAGGRVYDDKRGRLAPEISGSGILESPRNTESIDENENKPDPDKDGTISTLCCHHSTSAMATLGDDELGQILNLIRCHGDRKSFSLVCKQWMRVEGLTRSSIRVFESDYLRRLLPRFPNLVSFESSTFIADDQLQFLAKTCPKIEVVNLNFKNPRGNYDGFVEPSDFDGVGDNGIIALANGCLNLKKVLLRRRKKIGDFGVLSLAKIARNLTYLDLGWCNLITDQSLKAISSLNSITTLNLLGCSLITDAGLGFLATGSSSMSMRKLVISECDRVTDNGVSLFQQMSCLEEINISDCGPKITDIGGVALAVIPALKRLNMAWLINISDYTIIALAENCRSLKAMDLTGCELVSGAGIRAFSGHGSLEELVMASCFNINGNDIEQMVLGCRSLKHIVIEKGLRIWIPNQMIENLSRLCDFHWR 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57477720 57481419 - BLOR01776 Blo01g01776 56216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01776 559 SUPERFAMILY RNI-like 260 534 - -
Blo01g01776 559 Pfam hAT family C-terminal dimerisation region 83 155 IPR008906 GO:0046983
Blo01g01776 559 SMART LRR_CC_2 450 474 IPR006553 -
Blo01g01776 559 SMART LRR_CC_2 475 500 IPR006553 -
Blo01g01776 559 SMART LRR_CC_2 423 449 IPR006553 -
Blo01g01776 559 SMART LRR_CC_2 371 395 IPR006553 -
Blo01g01776 559 SMART LRR_CC_2 319 344 IPR006553 -
Blo01g01776 559 SMART LRR_CC_2 345 370 IPR006553 -
Blo01g01776 559 SUPERFAMILY Ribonuclease H-like 51 155 IPR012337 -
Blo01g01776 559 MobiDBLite consensus disorder prediction 154 182 - -
Blo01g01776 559 MobiDBLite consensus disorder prediction 167 181 - -
Blo01g01776 559 Gene3D Ribonuclease Inhibitor 360 437 IPR032675 -
Blo01g01776 559 Gene3D Ribonuclease Inhibitor 255 359 IPR032675 -
Blo01g01776 559 PANTHER OS03G0633100 PROTEIN 191 534 - -
Blo01g01776 559 Pfam F-box 200 237 IPR041567 -
Blo01g01776 559 Gene3D Ribonuclease Inhibitor 438 554 IPR032675 -
Blo01g01776 559 Gene3D - 190 236 - -
Blo01g01776 559 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 191 534 - -
Blo01g01776 559 Pfam Leucine Rich repeat 424 447 IPR001611 GO:0005515
Blo01g01776 559 Pfam Leucine Rich repeat 346 368 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01776 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - jre:109009490 445.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01776 Blo-Chr1:57477720 Blo01g01440 Blo-Chr1:53293575 1.41E-108 dispersed
Blo04g00430 Blo-Chr4:3523814 Blo01g01776 Blo-Chr1:57477720 1.53E-10 dispersed
Blo07g00485 Blo-Chr7:11120874 Blo01g01776 Blo-Chr1:57477720 6.62E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g289 Blo01g01776 . . . . Bpe02g00168 . Bma01g02556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017226 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01776 Blo_Chr01 FPKM 2.111111 2.346079 1.87015 3.603075 10.035244 7.025363 9.157936 2.881546 2.499367 2.147265