Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01777 ATGGAAGCTCCTGAGTATTTCCAGACCGATTTCTGCTCACAGTTGCTGAACGAATGTCGCTACTCCTCAGACACTAAGACGGCCGGATGTAACGACAATTTTATCGTCGAGGAACTCCTCGACTTCTCAAATGATGAAGTGGCACTGCTCGATGCAAATGGCTCTTTTGATTGCCTCAATGTCAGCTCCACTGATTCATCCACCGTCTCCCTCCTCGACAGATCCAATTATTCTTCGTTTTCCGGCTGTGAACCAACGTCTTTCCCCGGTGATTTTGCCGCTGACTTTCAATTCTCCAGCGATCTCTGTGTTCCGTATGACGATTTAGCTGAGCTCGAATGGCTTTCGAATTTCGCTGAGGAATCCTTCTCCAGCGAAGATTTGCAGAAGCTCCAGCTGATATCAGGCATGACAGCACTCCAACCCGATGATACCAACCGAAACTTGCCGGCGTTCTACTCCGACATGTCTGTTCCTGCGAAGGCGCGTAGTAAGCGATCTCGTGCCCCGCCATGCATATGGACTTCTAGTTTCCCCAGACTTTCTCCGATGTCTTCATCCTCGGAAACCGACATTGTAGAGCCGGTGCCACCGAATCCCGCTAAGAAAGCAGGGAGAGCATCGCCAAACGGGAAGCCATTTCGCAACGGAGCATCGGAGAGAACGGGAGAGGGCCGGAAGTGCCTGCATTGCGCCACCGATCAGACGCCGCAGTGGCGAACAGGACCGATGGGTCCAAAGACTCTCTGCAATGCTTGCGGCGTCCGGTTCAAATCCGGGAGACTGGTGCCGGAGTACCGGCCGGCAGCCAGCCCGACATTCGTGCTGACAAAGCACTCAAACTCGCATCGGAAAGTGATGGAGCTCCGTCGTCAGAAGGAGATTATCCAAGCCCACCAAAACCACAACTTCCATGATCAGAACATGCTGTTTGATGCATCCAACAACGAAGAGTACTTGATCAAACAGCATGTAGCCGCGGATTCAGTCATCTCCTCAAGATGGTAG 1008 52.38 MEAPEYFQTDFCSQLLNECRYSSDTKTAGCNDNFIVEELLDFSNDEVALLDANGSFDCLNVSSTDSSTVSLLDRSNYSSFSGCEPTSFPGDFAADFQFSSDLCVPYDDLAELEWLSNFAEESFSSEDLQKLQLISGMTALQPDDTNRNLPAFYSDMSVPAKARSKRSRAPPCIWTSSFPRLSPMSSSSETDIVEPVPPNPAKKAGRASPNGKPFRNGASERTGEGRKCLHCATDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIQAHQNHNFHDQNMLFDASNNEEYLIKQHVAADSVISSRW 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57491106 57492256 - BLOR01777 Blo01g01777 56217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01777 335 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 MobiDBLite consensus disorder prediction 184 224 - -
Blo01g01777 335 PIRSF Txn_fac_GATA_plant 12 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Blo01g01777 335 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 PANTHER GATA TRANSCRIPTION FACTOR 1 328 - -
Blo01g01777 335 SMART GATA_3 222 272 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 CDD ZnF_GATA 227 274 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 286 - -
Blo01g01777 335 Gene3D - 222 272 IPR013088 GO:0006355|GO:0008270
Blo01g01777 335 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 PANTHER GATA TRANSCRIPTION FACTOR 1 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01777 Blo-Chr1:57491106 Blo05g00081 Blo-Chr5:801274 3.59E-81 dispersed
Blo14g00181 Blo-Chr14:1429922 Blo01g01777 Blo-Chr1:57491106 6.11E-32 dispersed
Blo16g00045 Blo-Chr16:1863555 Blo01g01777 Blo-Chr1:57491106 4.54E-13 dispersed
Blo01g01777 Blo-Chr1:57491106 Blo06g00706 Blo-Chr6:30149587 4.24E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11960 PF00320 GATA 4.10E-15 CL0167 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01777 - - zju:107420464 408.683