Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01777 ATGGAAGCTCCTGAGTATTTCCAGACCGATTTCTGCTCACAGTTGCTGAACGAATGTCGCTACTCCTCAGACACTAAGACGGCCGGATGTAACGACAATTTTATCGTCGAGGAACTCCTCGACTTCTCAAATGATGAAGTGGCACTGCTCGATGCAAATGGCTCTTTTGATTGCCTCAATGTCAGCTCCACTGATTCATCCACCGTCTCCCTCCTCGACAGATCCAATTATTCTTCGTTTTCCGGCTGTGAACCAACGTCTTTCCCCGGTGATTTTGCCGCTGACTTTCAATTCTCCAGCGATCTCTGTGTTCCGTATGACGATTTAGCTGAGCTCGAATGGCTTTCGAATTTCGCTGAGGAATCCTTCTCCAGCGAAGATTTGCAGAAGCTCCAGCTGATATCAGGCATGACAGCACTCCAACCCGATGATACCAACCGAAACTTGCCGGCGTTCTACTCCGACATGTCTGTTCCTGCGAAGGCGCGTAGTAAGCGATCTCGTGCCCCGCCATGCATATGGACTTCTAGTTTCCCCAGACTTTCTCCGATGTCTTCATCCTCGGAAACCGACATTGTAGAGCCGGTGCCACCGAATCCCGCTAAGAAAGCAGGGAGAGCATCGCCAAACGGGAAGCCATTTCGCAACGGAGCATCGGAGAGAACGGGAGAGGGCCGGAAGTGCCTGCATTGCGCCACCGATCAGACGCCGCAGTGGCGAACAGGACCGATGGGTCCAAAGACTCTCTGCAATGCTTGCGGCGTCCGGTTCAAATCCGGGAGACTGGTGCCGGAGTACCGGCCGGCAGCCAGCCCGACATTCGTGCTGACAAAGCACTCAAACTCGCATCGGAAAGTGATGGAGCTCCGTCGTCAGAAGGAGATTATCCAAGCCCACCAAAACCACAACTTCCATGATCAGAACATGCTGTTTGATGCATCCAACAACGAAGAGTACTTGATCAAACAGCATGTAGCCGCGGATTCAGTCATCTCCTCAAGATGGTAG 1008 52.38 MEAPEYFQTDFCSQLLNECRYSSDTKTAGCNDNFIVEELLDFSNDEVALLDANGSFDCLNVSSTDSSTVSLLDRSNYSSFSGCEPTSFPGDFAADFQFSSDLCVPYDDLAELEWLSNFAEESFSSEDLQKLQLISGMTALQPDDTNRNLPAFYSDMSVPAKARSKRSRAPPCIWTSSFPRLSPMSSSSETDIVEPVPPNPAKKAGRASPNGKPFRNGASERTGEGRKCLHCATDQTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIQAHQNHNFHDQNMLFDASNNEEYLIKQHVAADSVISSRW 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57491106 57492256 - BLOR01777 Blo01g01777 56217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01777 335 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 MobiDBLite consensus disorder prediction 184 224 - -
Blo01g01777 335 PIRSF Txn_fac_GATA_plant 12 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Blo01g01777 335 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 PANTHER GATA TRANSCRIPTION FACTOR 1 328 - -
Blo01g01777 335 SMART GATA_3 222 272 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 CDD ZnF_GATA 227 274 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 286 - -
Blo01g01777 335 Gene3D - 222 272 IPR013088 GO:0006355|GO:0008270
Blo01g01777 335 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Blo01g01777 335 PANTHER GATA TRANSCRIPTION FACTOR 1 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01777 - - - zju:107420464 408.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01777 Blo-Chr1:57491106 Blo05g00081 Blo-Chr5:801274 3.59E-81 dispersed
Blo14g00181 Blo-Chr14:1429922 Blo01g01777 Blo-Chr1:57491106 6.11E-32 dispersed
Blo16g00045 Blo-Chr16:1863555 Blo01g01777 Blo-Chr1:57491106 4.54E-13 dispersed
Blo01g01777 Blo-Chr1:57491106 Blo06g00706 Blo-Chr6:30149587 4.24E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo12g00130 . 1 118 C2C2-Gata Transcription Factor Family AT3G24050 59.7 1.5e-37 153.7
Blo01g01777 . 78 328 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.4e-65 245.4
Blo16g00063 BCT 81 422 C2C2-Gata Transcription Factor Family AT5G66320 50.6 7.7e-73 271.2
Blo19g00240 . 20 358 C2C2-Gata Transcription Factor Family AT4G17570 55.7 2.3e-89 326.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11960 PF00320 GATA 4.10E-15 CL0167 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01777 Blo_Chr01 FPKM 5.690761 6.209355 30.208685 29.261827 27.780672 27.94142 30.908218 24.260626 23.593927 27.061159