Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01781 ATGGGAAGCAAAGCTCTGTTTCTACTCAAAGGAGCTTCTTTATCATCATTCCCGAAGCCCCAAGATTTTCTCTCCAACACCCATTGCCGTTTCCGCCAAGTGCGGAGGTGGTCGACGAAATCGGGAAGTGGGTCGTCTCTTCAACCTCCAGATGTGGCTAGTTTGGCCGAAACAGCTCGAATTTCCCTTACGGCGAGCGAGATCGAAGAATTTACTCCTAAGATCAGACAAGTTGTCGATTGGTTTGGACAACTCCAGGATGTTGATCTTGAAAGCATTGAACCTTCACTTAGAGCAGATACTGAAGATGACAATCTGCGGGACGATTCACCTGAAGTATTCAAAAATAGGGAGGCGTTGATTGCTGGAGTTCCAGTCTTTGAAGAGGCTTACATTAAAGTGCCTAAATCAGAAAAGTTGTCCGAAGCTGCGAGAGTAGAGTCGGAGAAGAAGCAGATGGAGGATGAGGAAAAGAAGGATTTAAATCACATCAATAACATTACCGACCATAAAAAGGAGAAGAGTAAGAAGAAGAAGGAGAAAGAAAGCCGGCGTAAGAACAAGTCATATCACATCCCCAGATTTGGATGTTTCAGAATCGAAAAGGACGACAAGGGGAATTTCGATATGGAAATTGTCGACAGTTTCGAAGAGCGTGGAAATCCAACTCATCTTCTCGTAATGGTTAATGGTTTAATCGGCAGTGCTGATAATTGGAAATTTGCAGCCAAGCAGTTTTTGAAGAGTTATCCTGGAGAACTTATAGTTCACTGCAGTAAATGTAATCCAGCATCACTGACATTTGATGGAGTTGATAAGATGGGAGGCAGATTAGCAGAAGAGGTTGTTTCAGTGATTGGTCGACACCCGGATGTGAAGAAGATCTCATTTATCAGCCATTCATTAGGCGGCCTCGTAGCAAGATATGCTATAGCAATATTATACGATCGAAACGGCAGCAGACAACATAACCAGGAAAATGGAGAGAGTGGGATTAACAAGTCTACTGATCAATGTCTGGAAGAGAAAAGCAAAGGAAAAATTGCAGGATTAGAGCCAATCAATTTCATAACTTGCGCTACCCCGCATCTGGGTTCGAGGGGGCATAAACAGGTTCCTGCATTTTGTGGTCTTTACCCACTTGAAAAAGCAGCGTGCCATACTGCATGGTTTCTTGGTAGAACTGGAAAACATCTATTTTTAGCAGATGGGAAAAATGGAAAACCACCTCTTCTTCTTCAGATGGTCAGTGATTGCGAGGATCTCAAATTTCTATCTGCTTTGCACTCCTTCTCACGAAGAATTTCTTACGCAAATGTTTGTTTTGATCATCTTGTGGGATGGAGTACATCATCTCTAAGACGTCATAATGAACTACCAAAGCGGAAAAACTTATCGAGAGATAAGAAATACCCGTATATCGCAAATTCAGAGGCTGGGATCTTTGTCGAGGCCCGAGAAGAGAACCCTTTGGACGGCGAAGACGACGAGAGCGGCAACATTGACATGGAAGAGAAAATGATAAGAGCATTGACCAAAATGAAATGGGATCGAGTCGACGTCGACTTCAGCAGAAGTAAACAGAGATATCTCGCGCACAGTACTATTCAGGCAAGTTGCCATTGCTCTGAAGCTTCATCCTCTCCAAAAAGTGATTGGTTTTAG 1665 43.3 MGSKALFLLKGASLSSFPKPQDFLSNTHCRFRQVRRWSTKSGSGSSLQPPDVASLAETARISLTASEIEEFTPKIRQVVDWFGQLQDVDLESIEPSLRADTEDDNLRDDSPEVFKNREALIAGVPVFEEAYIKVPKSEKLSEAARVESEKKQMEDEEKKDLNHINNITDHKKEKSKKKKEKESRRKNKSYHIPRFGCFRIEKDDKGNFDMEIVDSFEERGNPTHLLVMVNGLIGSADNWKFAAKQFLKSYPGELIVHCSKCNPASLTFDGVDKMGGRLAEEVVSVIGRHPDVKKISFISHSLGGLVARYAIAILYDRNGSRQHNQENGESGINKSTDQCLEEKSKGKIAGLEPINFITCATPHLGSRGHKQVPAFCGLYPLEKAACHTAWFLGRTGKHLFLADGKNGKPPLLLQMVSDCEDLKFLSALHSFSRRISYANVCFDHLVGWSTSSLRRHNELPKRKNLSRDKKYPYIANSEAGIFVEAREENPLDGEDDESGNIDMEEKMIRALTKMKWDRVDVDFSRSKQRYLAHSTIQASCHCSEASSSPKSDWF 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57544189 57549294 + BLOR01781 Blo01g01781 56221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01781 554 Gene3D alpha/beta hydrolase 226 472 IPR029058 -
Blo01g01781 554 SUPERFAMILY Glu-tRNAGln amidotransferase C subunit 47 136 IPR036113 GO:0006450
Blo01g01781 554 Pfam Putative serine esterase (DUF676) 221 450 IPR007751 -
Blo01g01781 554 TIGRFAM gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 51 136 IPR003837 GO:0006450
Blo01g01781 554 Gene3D - 49 89 - -
Blo01g01781 554 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 160 542 - -
Blo01g01781 554 PANTHER UNCHARACTERIZED 160 542 IPR044294 -
Blo01g01781 554 MobiDBLite consensus disorder prediction 142 187 - -
Blo01g01781 554 SUPERFAMILY alpha/beta-Hydrolases 220 453 IPR029058 -
Blo01g01781 554 Coils Coil 136 156 - -
Blo01g01781 554 Hamap Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 46 139 IPR003837 GO:0006450
Blo01g01781 554 Pfam Glu-tRNAGln amidotransferase C subunit 63 134 IPR003837 GO:0006450
Blo01g01781 554 MobiDBLite consensus disorder prediction 142 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01781 - - - qsu:112003436 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01781 Blo-Chr1:57544189 Blo09g00165 Blo-Chr9:5304788 2.32E-85 dispersed
Blo01g01781 Blo-Chr1:57544189 Blo14g00636 Blo-Chr14:12597811 1.98E-119 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g228 Blo01g01781 . . . . Bpe02g00296 . Bma01g02561 . . Cma01g01441 . . . . . . Bhi04g01133 . . . . . Lcy13g1381 . . . . . . . . . . . . . Chy04g00161 Cme03g01720 . . . . . . . . . Cmo01g01495 . . . . . . . . . . . . . . Cla08g01243 . . . . . . Lsi08g01105 Csa02g02295 . Cme04g00185
Vvi18g588 Blo01g01781 . Bda01g00855 . Bpe02g00160 . . Bma01g02565 . . Cma01g01447 Cma09g00619 . . . Cpe06g00478 . . . . . . . . . . . . . . . Cone4ag1259 . . . Lsi04g02315 Csa03g04533 Chy04g00170 . . . Bda11g00819 . Bpe02g01094 . . . . Cmo01g01501 Cmo09g00604 . . . Car09g00549 . Cpe02g00501 Bhi09g02551 . . . . . . Cla11g01465 Cam11g1518 Cec11g1556 Cco11g1551 Clacu11g1682 Cmu11g1499 . . . . Cme04g00196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006304 1 3 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01781 Blo_Chr01 FPKM 0.240223 0.0 1.589126 1.157989 0.737789 0.842658 0.3486 0.424441 0.658471 0.415561