Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01784 ATGGCTGCTTCAATTACTCCATCTAAGAGGCAGCTTGATCATAACTTTACAATTCCCCATGGAAAAAGAAAGTGGGAAAAGTCATCAGGCGCTTTTTCACAAAACCAAATGAAGTTTGCATCCGGGAGTGTTGTTTTTCGTTTTCTATGTCCTGTTTCTAAATCGGGAAGCATTATTGGAAAAGGAGGTGCTACTGTTTCACAAATTCGTCAAGAAACAGGGGCAAAGGTGAAAATAGAGGACACTATTCCTGGTTGTGATGAAAGAATTGTTACTATTGTTGGCTCTGATCAAGAGGTTGTGGCCAATTCCGAGGATGATGAGGAGATTGCACGTGAAGAAGAAAACATGGAAGAGAAGGATGATGATGCTACTGAACCAAAAAAAGACCATGAAGATGAAGATTCTGTCGCAAAGATTGATACCACGTCTGTTAAGGGAACATCATCTGTCCAGAGGGCTTTGTTACTTCTTTTTGAGAGGCTGATTCACGGAGATGTAGCTAATGAGGTAGGGAATGGAGAAAGTGAAAATTCATCTGCATGTATCTTTAGGTTACTGGTGCTTTCCAGTCAAATTGGTTGCATTTTGGGTAAAGGTGGCTGTGTAATCAAGCAGATGGCGGCTGAAAGTGGTGCACAGATTAGGATCATTCCTAAGGATAAATTTCCTTCTTGCGCTTCAGGTGCAGGGGAATTAGTTCAGGTCAGCGGTGGAGTTGATGCAGTTAGGAGAGCTGTTAAATCTATTTCTCAGCAGCTCTTGGAGAACCATCGTGATACTGATTCTTCCGCAACCAATATGCCAGAAAAATTACCCCACTCTAAGGCTGAAGCTTATCCCCCAGTCAATCATCCTCAAGGAGCATCTCATATTGGGCCTAATGATGATGCAGACAGTCAATCCGCTGAACCCCACATCGCATCTAAATTTCATGAAAGCAATTTCTCTGACAGAATGAATACTTCGCCGGACAGGCTTAGCTTTCGATTGTGGTGCCCAGCTGAGAGAGTGGGGGGTGTAATCGGAAAAGGAGGAACAATAATTAAAACCATTAAGCAAGAGACCCACTGTGAGGTTAGAGTTTTGGAAGGTGTTCCCGACTCCGAAGATCGGATTATCCTTGTATCTGGAATTGCGCGACCAGAAGAAAGAATATCAGCTGTGCAAGATGCCGTTCTTCGTGTACAAAGTAGGATTGTCAAGGCTGTCCCAGATACCAAGGAGCAGAATGTGATGGCAAAGATTCTGGTTCCTTCCAATCAAATTGGTTGCTTGCTTGGAAAGGGTGGATCCGTTATAGCAGAAATGAGGAAGTCATCTACCGCACATATTCGCATAATGGGAAAAGATCAGATTCCTAAGTGTGCCGCTGAAGATGAAGAAGTAGTTCAGATAAATGGAGACTATGATTCAGTTCAAGAGGCTCTTTTGCAAATAACTACACGGTTGCAACAAAATTTTTTTCGTAATGCATTTCCTTCTATGAAATATTCTTCAAATCCAGCGTTGCTTGATCAAGGACCTCCATTTCCTTCATTTATGGGAAGAAGAGAATTGTCACCTCCGGGAGTATTTTCCAACTTTGGCCCTACATTTCACAAGTTTAATTCTATTAGTGGCCTGCCCCCATATGGGAGTTTGCATTCCCACGATGATCGTCAATCTTTTATGCACAATATTCATAGACCAGGAATTCCTCCTTTCTTGTCTGACAGAAAGCCATGGGGCTCCCGGGGATTTGTAGAAGATGGTGGGCCATTGGGACTGCCTGATTTTGTGGGAGCTCCTCATAGAAGAATTGGTGGACTTGGAGGAGGTAGCCAATCAGCTATTATCACAAACACCACTGTTGAAGTTGTTGTACCTCACAGTCTTGTTCCTGAAATATATGGAGAAGATGGTGAATGCTTAAGGCAAATTCGTCAGATTTCAGATGCAAAAATTACAATTACTGAAGCAAAGCCAGGAGCAGTTGAGACTCTCATTATAATTTCTGGAACACCAGAGCAAACCCACGCCGCCCAGAGCTTAATTCAAGCATTTGTAATGTGTGGATCTGAGTCAAGTTGA 2073 42.84 MAASITPSKRQLDHNFTIPHGKRKWEKSSGAFSQNQMKFASGSVVFRFLCPVSKSGSIIGKGGATVSQIRQETGAKVKIEDTIPGCDERIVTIVGSDQEVVANSEDDEEIAREEENMEEKDDDATEPKKDHEDEDSVAKIDTTSVKGTSSVQRALLLLFERLIHGDVANEVGNGESENSSACIFRLLVLSSQIGCILGKGGCVIKQMAAESGAQIRIIPKDKFPSCASGAGELVQVSGGVDAVRRAVKSISQQLLENHRDTDSSATNMPEKLPHSKAEAYPPVNHPQGASHIGPNDDADSQSAEPHIASKFHESNFSDRMNTSPDRLSFRLWCPAERVGGVIGKGGTIIKTIKQETHCEVRVLEGVPDSEDRIILVSGIARPEERISAVQDAVLRVQSRIVKAVPDTKEQNVMAKILVPSNQIGCLLGKGGSVIAEMRKSSTAHIRIMGKDQIPKCAAEDEEVVQINGDYDSVQEALLQITTRLQQNFFRNAFPSMKYSSNPALLDQGPPFPSFMGRRELSPPGVFSNFGPTFHKFNSISGLPPYGSLHSHDDRQSFMHNIHRPGIPPFLSDRKPWGSRGFVEDGGPLGLPDFVGAPHRRIGGLGGGSQSAIITNTTVEVVVPHSLVPEIYGEDGECLRQIRQISDAKITITEAKPGAVETLIIISGTPEQTHAAQSLIQAFVMCGSESS 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57567627 57572125 + BLOR01784 Blo01g01784 56224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01784 690 CDD PCBP_like_KH 184 251 - -
Blo01g01784 690 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 548 - -
Blo01g01784 690 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 619 675 - -
Blo01g01784 690 Gene3D K Homology domain, type 1 325 403 IPR036612 GO:0003723
Blo01g01784 690 Gene3D K Homology domain, type 1 613 685 IPR036612 GO:0003723
Blo01g01784 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 408 490 IPR036612 GO:0003723
Blo01g01784 690 Coils Coil 103 123 - -
Blo01g01784 690 ProSiteProfiles Type-1 KH domain profile. 615 679 - -
Blo01g01784 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 615 683 IPR036612 GO:0003723
Blo01g01784 690 SMART kh_6 325 398 IPR004087 GO:0003676
Blo01g01784 690 SMART kh_6 42 112 IPR004087 GO:0003676
Blo01g01784 690 SMART kh_6 180 255 IPR004087 GO:0003676
Blo01g01784 690 SMART kh_6 410 485 IPR004087 GO:0003676
Blo01g01784 690 SMART kh_6 614 684 IPR004087 GO:0003676
Blo01g01784 690 CDD PCBP_like_KH 415 481 - -
Blo01g01784 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 256 IPR036612 GO:0003723
Blo01g01784 690 MobiDBLite consensus disorder prediction 102 143 - -
Blo01g01784 690 ProSiteProfiles Type-1 KH domain profile. 181 250 - -
Blo01g01784 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 319 389 IPR036612 GO:0003723
Blo01g01784 690 CDD PCBP_like_KH 328 397 - -
Blo01g01784 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 37 100 IPR036612 GO:0003723
Blo01g01784 690 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 548 - -
Blo01g01784 690 MobiDBLite consensus disorder prediction 122 140 - -
Blo01g01784 690 ProSiteProfiles Type-1 KH domain profile. 43 108 - -
Blo01g01784 690 CDD KH-I 617 680 - -
Blo01g01784 690 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 619 675 - -
Blo01g01784 690 Gene3D K Homology domain, type 1 41 115 IPR036612 GO:0003723
Blo01g01784 690 Gene3D K Homology domain, type 1 179 258 IPR036612 GO:0003723
Blo01g01784 690 Gene3D K Homology domain, type 1 408 487 IPR036612 GO:0003723
Blo01g01784 690 ProSiteProfiles Type-1 KH domain profile. 411 480 - -
Blo01g01784 690 MobiDBLite consensus disorder prediction 253 270 - -
Blo01g01784 690 MobiDBLite consensus disorder prediction 102 121 - -
Blo01g01784 690 ProSiteProfiles Type-1 KH domain profile. 326 393 - -
Blo01g01784 690 MobiDBLite consensus disorder prediction 253 304 - -
Blo01g01784 690 CDD PCBP_like_KH 45 96 - -
Blo01g01784 690 Pfam KH domain 46 102 IPR004088 GO:0003723
Blo01g01784 690 Pfam KH domain 415 480 IPR004088 GO:0003723
Blo01g01784 690 Pfam KH domain 617 680 IPR004088 GO:0003723
Blo01g01784 690 Pfam KH domain 329 378 IPR004088 GO:0003723
Blo01g01784 690 Pfam KH domain 185 251 IPR004088 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01784 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - qsu:112004419 859.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01784 Blo-Chr1:57567627 Blo04g01387 Blo-Chr4:33269394 3.79E-86 dispersed
Blo16g00837 Blo-Chr16:35314094 Blo01g01784 Blo-Chr1:57567627 1.22E-15 dispersed
Blo01g01784 Blo-Chr1:57567627 Blo11g00579 Blo-Chr11:5654915 1.74E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01784 Blo_Chr01 FPKM 4.451695 6.580788 5.179508 4.84773 6.921684 6.453403 7.329381 8.699095 8.41643 8.628319