Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g01789 ATGGGTACTGGTTGGAAAAGATCCTTCTGCTCCACCACCCGTAGAGACTCGAAATCCAATCTTTCAAAGGAGGAGCAGAGGAGTCATACTCCAAGTCCTAGCCCAACCCCCAGAAGCAGCTTCAAGCTAGGATTCCTCTCCGGCGGCAACGATGCATCCACTCCACGATCGCAGCCTCTGTCAGCCGCTCCGCCTGGCTTGCGCTGCCGAACAGCGGCAGAGGATGGGTTGAGTGCAGATCAACGCGAAACCACGCTGAAGACAAGGAAGAGCGGAAAATTAGTGGATTCGACTCCTAATTCTCCACGCTCTCCTCTAAAGATCTCCCTCTTCAAGAACAGCTTCAAGTTCAGAAGTAGCTGTGGTGTTTGTTTAAACAGCATGAAGAGAGAGAAAGGAACAGCCATGTATACAGCTGATTGTTCCCATACCTTCCATTTTCTCTGCATAGCCACTCACGTCAGAAAGAATGGTAACCTCGTCTGCCCACTCTGCAACACCGCCTGGAAAGACGCTCCATTGCTGTCCGTCCACAAGAACCTCGGCCAAGACGATGCAGAGAAAAATCACTTTGATATGGAATCTAAAAAAGCTACAGAATCATCTCCTAGAGCATTCATAACCTTGAAGGAGCAAGGAAAATCGCCGCAGCTGACTAAGAAACCATTGAATTCCTGGTCCTATGATGAAGACGAGCCAGTCGTATCACCGTTTGGTCGGATTATTCCCATTTCAGACCAGGTGGATGAGACGAGAGACTTCCCGGGATTCTTTGCCAATCCGAATCCTTCGCCTGACTTAAAGTCCGGCGGTGGAAAACAGGCGAAAGAAAGAAATTTGAGAAGCAATGTTCAAGTTAGGATATTACCAGAATCGGCCCTTATATACGCAGGAGATAGCCACGAGACGTATGCTGTGGCGCTTAGCTTGAAGGCAGCCCCGCCACCGTCTTCTCCCACGTACCGCGCTCCGATTGACTTAGTGACAGTACTCGACGTAAGTGAAAGAATGACTGGCGCTAAGCTGGAGATGCTAAAGCGCGCTATGCGCCTGGTCATCTCCTCTCTCATCTCGTCCGACCGCCTTTCTATCGTTGCTTTATCTGGCAGTCCTAAGCGGCTGCTACCTCTGAAGAGAATGACAGTTCAAGGACAGCGTACAGCGTGTCAAGTGATCGACCAACTCGTATGCAGCGACGGTAACTGCGTTGCAGAAGCTACTAAAAAGGCGGCTCTGGTGCTTGAAAATCGACGGGAGAAAAACCCAGTAGCGAGCATCATGCTTTTGTTGGATGGCCAGGATGAGCGGTTCCAAAACCGCAATGATTTTATCGATCAACTTCATTGGAGGAGCCAAGAGAGGTCTATCGGTTTCTCTCATATTGAGATTCCTGTTAATGAATTTGGGCTTGGAGAAGATGGTAACTTCAATCACGAGCTTGCTGAAGTATCTTTTGCTAATTGCATTGGTAGTTTACAAAGTCCGGTTGTGCAAGACCTCAGGATTCAGCTCAATTTCTCCGATTCTTCGTCTGTTGAGATATTGGCTATCTACATGGCAATTGGGTCATCGCCAACTGTCTGCAATTCAGGTTGTCTGCGGCTGGGCGATTTATACGCTGACGAGGAGAGAGAATTACTCGTCGAATTAAGGATGCCTACGTCGGCTGTTGGAAACCAATTCCCTATGTCCGTACGATGTCTTTACAAAGACACTGCAACCCAAGACGTTGTCTTTTACAGAGAAGAAGCTCTTGTCGTACCACATCCCCACGTCGTTCGAATATCACCTTCTAAAACTGATAAATTGAAGAATATGTTTATTACTACCAGGGCGGTGGCTGAATCGAGGAGCCTAAACGACGCCGGCGATTTTTTGAGCGCTTATAATTTACTTGCGTCAGCTCAAGCTTTGCTCACGCAGTCTAACTCCACTCCGGGCGGCGACGAATACGTTCGAACGTTGGAGGTTGAGATGGCAGAGTTACATTGGCAGAGGCAGAATGAGATGGAGGAGCAACATCAGATGTTGATGATGACGATGATGATCGAACAGAGCAGATGCAGCGAGAGAGAAACTACGACAGTTGTTGATGAGAACAAGGACCCTGCTACTCCCAAGTCAACCTGGAGAGCGGTTGATAAGCTGAATAATATGGCCATCGCAAAGCTGTTGAGAATTAGATCAGTAGGAGATTTGCATGGCTTCCAAAATGGAAAGCTTTAG 2226 48.25 MGTGWKRSFCSTTRRDSKSNLSKEEQRSHTPSPSPTPRSSFKLGFLSGGNDASTPRSQPLSAAPPGLRCRTAAEDGLSADQRETTLKTRKSGKLVDSTPNSPRSPLKISLFKNSFKFRSSCGVCLNSMKREKGTAMYTADCSHTFHFLCIATHVRKNGNLVCPLCNTAWKDAPLLSVHKNLGQDDAEKNHFDMESKKATESSPRAFITLKEQGKSPQLTKKPLNSWSYDEDEPVVSPFGRIIPISDQVDETRDFPGFFANPNPSPDLKSGGGKQAKERNLRSNVQVRILPESALIYAGDSHETYAVALSLKAAPPPSSPTYRAPIDLVTVLDVSERMTGAKLEMLKRAMRLVISSLISSDRLSIVALSGSPKRLLPLKRMTVQGQRTACQVIDQLVCSDGNCVAEATKKAALVLENRREKNPVASIMLLLDGQDERFQNRNDFIDQLHWRSQERSIGFSHIEIPVNEFGLGEDGNFNHELAEVSFANCIGSLQSPVVQDLRIQLNFSDSSSVEILAIYMAIGSSPTVCNSGCLRLGDLYADEERELLVELRMPTSAVGNQFPMSVRCLYKDTATQDVVFYREEALVVPHPHVVRISPSKTDKLKNMFITTRAVAESRSLNDAGDFLSAYNLLASAQALLTQSNSTPGGDEYVRTLEVEMAELHWQRQNEMEEQHQMLMMTMMIEQSRCSERETTTVVDENKDPATPKSTWRAVDKLNNMAIAKLLRIRSVGDLHGFQNGKL 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57620563 57622887 - BLOR01789 Blo01g01789 56229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g01789 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 225 IPR013083 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 258 277 - -
Blo01g01789 741 Gene3D von Willebrand factor, type A domain 326 490 IPR036465 -
Blo01g01789 741 SMART VWA_4 324 501 IPR002035 -
Blo01g01789 741 ProSiteProfiles Zinc finger RING-type profile. 121 166 IPR001841 -
Blo01g01789 741 Coils Coil 652 672 - -
Blo01g01789 741 CDD RING-H2 121 166 - -
Blo01g01789 741 SMART ring_2 121 165 IPR001841 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 11 25 - -
Blo01g01789 741 Pfam Ring finger domain 120 166 IPR001841 -
Blo01g01789 741 Pfam von Willebrand factor type A domain 327 433 IPR002035 -
Blo01g01789 741 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 739 - -
Blo01g01789 741 ProSiteProfiles VWFA domain profile. 326 484 IPR002035 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 26 60 - -
Blo01g01789 741 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 739 - -
Blo01g01789 741 SUPERFAMILY RING/U-box 114 170 - -
Blo01g01789 741 MobiDBLite consensus disorder prediction 75 90 - -
Blo01g01789 741 SUPERFAMILY vWA-like 322 436 IPR036465 -
Blo01g01789 741 MobiDBLite consensus disorder prediction 1 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g01789 - - - pvy:116137692 727.628
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01789 Blo18g00728 CCT
Blo01g01789 Blo17g00085 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01789 Blo-Chr1:57620563 Blo17g00085 Blo-Chr17:653072 0 dispersed
Blo01g01789 Blo-Chr1:57620563 Blo18g00095 Blo-Chr18:795748 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g01789 Blo_Chr01 FPKM 29.208725 31.535313 44.039921 42.243618 30.322197 30.074533 33.515148 30.610937 28.618881 32.368805