Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00050 ATGGAGGGATCTGCCTCTTCCCAGAGGAAAATGGGCAGAGGAAAGATCGAGATTAAGCAGATCAAAAACACTACGAATCGACAAGTTACCTTCTGTAAGCGACGCAATGGGTTGCTGAAGAAAGCTTATGAATTATCTGTTTTGTGCGATGCGGAAGTTGCACTCATTGTCTTCTCCACCCGAGGTCGCCTCTATGAGTATGCCAATAATAGCGTAAGAGGGACAATAGAGAGGTACAAGAAAGCCTGCTCAGAGTCTTCCAACGCACCTACCGTGGCTGAAACAAATACTCAGTTTTACCAGCAAGAAGCATCCAAACTAAGAAGGCAGATCCGAGACATCCAGGCTTCAAACAGCTCATTGTCGTTTAAGGATTTGAAGAATCTGGAGGGAAGATTGGAGAAAGGCATCAGTCGAATCCGAGCAAAAAAGGTATGA 438 45.21 MEGSASSQRKMGRGKIEIKQIKNTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKACSESSNAPTVAETNTQFYQQEASKLRRQIRDIQASNSSLSFKDLKNLEGRLEKGISRIRAKKV 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 319832 321767 - BLOR09780 Blo02g00050 56280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00050 145 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 8 144 - -
Blo02g00050 145 SUPERFAMILY SRF-like 12 86 IPR036879 GO:0003677|GO:0046983
Blo02g00050 145 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Blo02g00050 145 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Blo02g00050 145 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Blo02g00050 145 Pfam K-box region 94 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo02g00050 145 Gene3D - 23 128 IPR036879 GO:0003677|GO:0046983
Blo02g00050 145 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 144 - -
Blo02g00050 145 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Blo02g00050 145 CDD MADS_MEF2_like 12 88 IPR033896 GO:0000977|GO:0045944
Blo02g00050 145 ProSitePatterns MADS-box domain signature. 13 67 IPR002100 GO:0003677|GO:0046983
Blo02g00050 145 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Blo02g00050 145 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Blo02g00050 145 Coils Coil 97 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00050 Blo-Chr2:319832 Blo14g00862 Blo-Chr14:31760301 6.38E-64 dispersed
Blo02g00050 Blo-Chr2:319832 Blo11g00002 Blo-Chr11:10151 1.59E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11965 PF01486 K-box 2.10E-08 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00050 K09264 - ath:AT3G58780 234.958