Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00066 ATGAGTAGTGTCTGCGACAACTTCCACCCGTTTCTTCATTCTAAGAAAACCCTTCTGGAAGGTATTGATATTCCTCCCAGGAAGCTTCTTAATCGCCATGAAGGTCGTGATTTCTTCTCTGATTCGCCGCCTTTCTCGTTCTCCGGCGATGCCCTCCTGCAGAAATTCTTGCCCTGTAACAACAATGGCGGAGGCGATGGAGACGACGACGGAGATGACGATGATCTGTACTCCTCTGACTACTTTCGTATGTATGAGTTTAAGGTCCGGCGGTGTCCTCGCAGCCGGAGCCATGACTGGACGGACTGCCCTTTCGCTCACCCGGGAGAAAAAGCTCGCCGGAGAGACCCTCGCCGTTTTCACTACTCCGGCTACGTCTGCCCAGAGTTTCGCCGCGGTGGGTGCAACCGCGGCGATAGCTGTGAGTTCGCTCACGGCGTTTTCGAGTGCTGGCTTCATCCGGCGAGGTACCGAACTGAAGCTTGTAAAGATGGGAAAAACTGTAAAAGAAAGGTCTGTTTCTTCGCCCACTCTCCCCGGCAGCTTCGGATTCTGCCGGTAAACTCGCCGGAATTTCAGACGAGCAAGAAGAAGCTCCCGATCTCGGTCTCTGGCCCGAATCACTGCTGCTTATTTTGTCATTGTGGTTTATCATCTTCCCCAACCTCTACTCTCCTAGACATGTCTCATCTCTCTCCGCCCCTTTCGCCTCCAGTATCGCCTGCCAAACATCAGTCGGTGAACTCTTTGACTCCGATTTCGAGAAACGGTGAGGCTAAGTTGACCGGAACTGCACTTCCAGAAATGATCAACTCTCTGGAAGCAATGAGCTTCAACGAAGCGAATAAAAGGTCTCCAGTTATACCACCATGGATAGATGTTTCCATCTTGAGTGAAGAAAACCAGCAGCAGTTTATTCTGTCGCCATCAACTCCTAATTCATCTAGGTCGGTGAGTTGTGTGAGAAGGAATTTAAGTGCTGAGAACAAGGTTAAGGTTGAAAATGGCGGATTGGTTTGCTCTGATCCAGATGTCGGGTGGGTCGATGAGCTATTGATGTAG 1062 50.66 MSSVCDNFHPFLHSKKTLLEGIDIPPRKLLNRHEGRDFFSDSPPFSFSGDALLQKFLPCNNNGGGDGDDDGDDDDLYSSDYFRMYEFKVRRCPRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGYVCPEFRRGGCNRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRQLRILPVNSPEFQTSKKKLPISVSGPNHCCLFCHCGLSSSPTSTLLDMSHLSPPLSPPVSPAKHQSVNSLTPISRNGEAKLTGTALPEMINSLEAMSFNEANKRSPVIPPWIDVSILSEENQQQFILSPSTPNSSRSVSCVRRNLSAENKVKVENGGLVCSDPDVGWVDELLM 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 452529 453590 - BLOR09796 Blo02g00066 56296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00066 353 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Blo02g00066 353 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Blo02g00066 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 146 IPR000571 GO:0046872
Blo02g00066 353 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 22 352 - -
Blo02g00066 353 PANTHER UNKEMPT FAMILY MEMBER 22 352 IPR045234 -
Blo02g00066 353 Gene3D - 121 184 - -
Blo02g00066 353 ProSiteProfiles Zinc finger C3H1-type profile. 126 148 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00066 Blo-Chr2:452529 Blo11g00136 Blo-Chr11:1060843 4.68E-58 dispersed
Blo07g00496 Blo-Chr7:11955000 Blo02g00066 Blo-Chr2:452529 3.56E-45 dispersed
Blo14g00534 Blo-Chr14:7801614 Blo02g00066 Blo-Chr2:452529 4.41E-60 transposed
Blo15g00575 Blo-Chr15:11906893 Blo02g00066 Blo-Chr2:452529 4.64E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11966 PF00642 zf-CCCH 2.10E-06 CL0537 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00066 K23047 - jre:108986638 392.504