Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00141 ATGGCGGACTCGGATAACGAATCGGGAGGGCCTACCAGCAACGCTAATAGCGAGCACTCGAGGGAGCAAGACAGGTTCTTACCCATAGCCAACGTGAGCAGAATAATGAAGAAAGCTCTGCCAGCAAACGCCAAGATCTCGAAAGACGCAAAAGAAACAGTGCAAGAATGTGTTTCGGAGTTCATCAGCTTCATAACCGGCGAGGCCTCCGACAAGTGTCAGAGAGAAAAAAGGAAGACGATCAACGGCGACGATTTGTTGTGGGCCATGACTACTTTAGGATTCGAACAGTACGTGGAGCCTCTGAAAGTGTATCTACAGAAGTACAGAGAAACAGAAGGAGAGAAGAGCTCAGTCGGAAGACAAGGTGAAAAAGAGGGCGGCGGAGGTGGGTCCAGCTCGGGCGGGATTGATGCTGCCGGATCTGAAAGTGGAGGTGGCTTTAATGTAATGGGGGCGATGTACGGTGGGATGACGATGATGGGTCATCATCAGTCCCACGTGTACGGTCCAGGTGGATATCATCATATGGGTGGTGGTAGTCAAAAGGGCGGAACCGGCGGTCAGGGCTCCGGCAACCGGTGA 585 52.48 MADSDNESGGPTSNANSEHSREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEQYVEPLKVYLQKYRETEGEKSSVGRQGEKEGGGGGSSSGGIDAAGSESGGGFNVMGAMYGGMTMMGHHQSHVYGPGGYHHMGGGSQKGGTGGQGSGNR 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1233511 1234095 + BLOR09871 Blo02g00141 56371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00141 194 MobiDBLite consensus disorder prediction 1 24 - -
Blo02g00141 194 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Blo02g00141 194 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Blo02g00141 194 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Blo02g00141 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 172 IPR027113 GO:0001228|GO:0006355|GO:0016602
Blo02g00141 194 MobiDBLite consensus disorder prediction 172 194 - -
Blo02g00141 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Blo02g00141 194 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 172 - -
Blo02g00141 194 Gene3D Histone, subunit A 13 136 IPR009072 GO:0046982
Blo02g00141 194 MobiDBLite consensus disorder prediction 1 17 - -
Blo02g00141 194 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Blo02g00141 194 MobiDBLite consensus disorder prediction 112 141 - -
Blo02g00141 194 SUPERFAMILY Histone-fold 23 125 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00141 Blo-Chr2:1233511 Blo10g00864 Blo-Chr10:27339437 5.65E-78 dispersed
Blo03g00464 Blo-Chr3:15511121 Blo02g00141 Blo-Chr2:1233511 2.18E-67 transposed
Blo04g00929 Blo-Chr4:10990813 Blo02g00141 Blo-Chr2:1233511 3.61E-58 transposed
Blo05g00317 Blo-Chr5:3591375 Blo02g00141 Blo-Chr2:1233511 8.80E-47 transposed
Blo15g00440 Blo-Chr15:6493752 Blo02g00141 Blo-Chr2:1233511 2.25E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11979 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00141 K08065 - csv:101219076 251.906