Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo02g00171 ATGGCGGCGGAGGATTTAGAAAGCGGTGAGTTTTATTTGCGGTATTATGTAGGGCACAAAGGGAAGTTTGGCCATGAGTTTTTGGAGTTCGAGTTTCAACCGGATGGAAAGCTTCGCTATGCTAACAACTCCAACTACAAGAATGATACTATGATTCGAAAGGAAGTTTTCTTAACTCCTGCTGTTCTCCGTGAGTGTCGCCGCATTATCGCTGAAAGTGAGATCATGAAGGAAGACGATAACAACTGGCCAGAACCTGATCGCGTTGGTCGACAGGAGCTTGAGATTGTGATGGGTAATGAACACATATCATTCACCACTTCAAAGATTGGATCCCTTGTTGATGTTCAGAGCAGCAAGGATCCCGAAGGACTTCGTATATTCTACTATCTTGTTCAGGTCGAAAGTTTTATAAGAATATCGGATTTCAGTCGAGGTTTTGTTTTGTTTGTGCTTCTGTTTCTCGTCAAGATCCTTGAGCGAGCTGCAAAGTACGAAGAGGAAGCAGATATGGATGACACAGGAGGGTCATTTGTTGCCGTGAGGAGAATTTCTCAAGGTCTGGAGCGAGGCAACACCTGCCATTCAACTTCCGCTGAGGTTGTGGCAGGATCAGCAGCCTGGCTTGGCCGAGGTCTTTCTTGTGTTTGCGCACAGGGAAGAGAGAGTGATGATCGTCCTTCATTTGATCTAACATTTGCAGAGGAGGAATGCTTGCAAACACTACAAAGTCGTATTGATGTTGCATATGACAGTTCAATCCCAGAACATCAGGAAACTTTGAGGTCTCTATGGAATGTTGCCTTTCCAGAGGAAGAGCTTTGTGGTTTAATATCCGAACAGTGGAAAGAGATGGGTTGGCAGGGGAAGGATCCATCAACAGACTTTAGGGGCGGTGGCTTTATATCACTGGAGAATTTGTTGTTCTTTGCGAGGAATTTTCCGAGATCCTTCCAGGATCTTCTCCAAAAGCAGGAAGGAGATCGATCAGTTTGGGAATACCCATTTGCTGTGGCTGGTGTAAACATTACATTCATGCTAATTCAGATGCTTGATCTTGAAGCAGTCAAACCTCGGGCATTGGTGGGTGCAGTATTTTTGAAGTTTCTCTCGGAGAATGAATCAGCCTTTGACCTTCTCTATTGCATCACTTTCAAGCTAATGGATCAGCAATGGCTTGCCATGCGTGCCTCTTACATGGATTTCAATGCAGTCATGAAATCCACTCGCCGGGAACTGGAAAAAGAGCTATTGCAAGAGGGTGTAACCCGGCTGGAAGACCTGCCGTCTTACAGACTTCTTCTTTCCGAATAG 1314 45.28 MAAEDLESGEFYLRYYVGHKGKFGHEFLEFEFQPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQVESFIRISDFSRGFVLFVLLFLVKILERAAKYEEEADMDDTGGSFVAVRRISQGLERGNTCHSTSAEVVAGSAAWLGRGLSCVCAQGRESDDRPSFDLTFAEEECLQTLQSRIDVAYDSSIPEHQETLRSLWNVAFPEEELCGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFARNFPRSFQDLLQKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRALVGAVFLKFLSENESAFDLLYCITFKLMDQQWLAMRASYMDFNAVMKSTRRELEKELLQEGVTRLEDLPSYRLLLSE 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1486096 1495845 + BLOR09901 Blo02g00171 56401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo02g00171 437 Pfam Mago nashi protein 11 133 IPR004023 GO:0008380|GO:0035145
Blo02g00171 437 CDD Mago_nashi 10 133 IPR004023 GO:0008380|GO:0035145
Blo02g00171 437 ProSiteProfiles ELMO domain profile. 256 417 IPR006816 -
Blo02g00171 437 Gene3D Mago nashi 8 141 IPR036605 GO:0005634
Blo02g00171 437 PANTHER ENGULFMENT AND CELL MOTILITY 172 434 - -
Blo02g00171 437 SUPERFAMILY Mago nashi protein 10 133 IPR036605 GO:0005634
Blo02g00171 437 Pfam ELMO/CED-12 family 241 406 IPR006816 -
Blo02g00171 437 PANTHER ELMO/CED-12 FAMILY PROTEIN-RELATED 172 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo02g00171 K23538 ELMOD; ELMO domain-containing protein - qsu:112018015 478.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00260 Blo-Chr1:3335254 Blo02g00171 Blo-Chr2:1486096 5.18E-166 dispersed
Blo02g00171 Blo-Chr2:1486096 Blo12g00196 Blo-Chr12:12782090 9.13E-162 dispersed
Blo02g00171 Blo-Chr2:1486096 Blo07g00037 Blo-Chr7:627375 8.26E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1240 . . . . . . . . Cmo04g01927 . . . . . Sed06g1749 . . Bhi07g01921 Tan04g0051 Cmetu10g1689 Lac13g0056 Hepe10g1520 . . . . . . . . . . . . . Lsi04g00678 . Chy11g01760 Cme11g02293 Blo02g00171 . . . Bpe14g00771 . . . . . . Cma04g01831 . . . . . . . . . . . . Cla11g01342 Cam11g1400 Cec11g1423 Cco11g1419 Clacu11g1557 Cmu11g1378 Cre11g1798 Lsi09g01690 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000645 4 14 5 3 5 2 4 2 2 2 2 2 4 2 2 4 2 6 3 2 2 2 2 3 2 2 2 8 5 2 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo02g00171 Blo_Chr02 FPKM 5.641293 4.534562 11.279537 10.620869 11.161256 11.45489 12.316645 21.164272 22.071117 20.694174